Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2454 ATGGTGTATGGAACTCAAGATCTTCAGGAGTTGGTGAGACAATGTTCAATTTCGTTGCAAGTTTTTCTATCTGTTATGCATCTTACTGAAACCAATTTTTCTTTAATAGTTGGAGATCTACATGGAGATCTTAAGCAGGCTAGATCTGCACTTCAAATGGATGGTGTATTGAGCTCTGATGGTGTGATTCAAGTTGGAGATATACTAGATCGAGATGAAGAAGAAATTGCTATCTTGTCCTTGTTGCGATCATTAGATAAACAGGCAAAGGCAAAAGGTGGAGCTGTGTTTCAGGTCTTTCTTAGAGGTCCAAAGAACTTCAGGAAAGCTGTGAAATACTTGGGTCCTGCTCCTGGTGTTCTTTACGGTCATACCAAGCCTTATGTACAATCTAAGAGAAGGAAGTTTGAGAAGGTTAGAGGAAGGAAGAATAGCAAAGAACTTAGGGTTTAA 453 0.3929 MVYGTQDLQELVRQCSISLQVFLSVMHLTETNFSLIVGDLHGDLKQARSALQMDGVLSSDGVIQVGDILDRDEEEIAILSLLRSLDKQAKAKGGAVFQVFLRGPKNFRKAVKYLGPAPGVLYGHTKPYVQSKRRKFEKVRGRKNSKELRV* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2454 150 SUPERFAMILY Metallo-dependent phosphatases 19 89 IPR029052 -
Amo10g2454 150 PANTHER SHEWANELLA-LIKE PROTEIN PHOSPHATASE 1 37 99 - -
Amo10g2454 150 Gene3D - 79 149 - -
Amo10g2454 150 PANTHER SHEWANELLA-LIKE PROTEIN PHOSPHATASE 1 37 99 - -
Amo10g2454 150 Pfam Ribosomal protein 60S L18 and 50S L18e 97 149 IPR021131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2454 Amo-Chr10 85929852 85930747 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2454 99 150 Cytoplasmic Ribosomal Protein Gene Family AT3G05590 61.538 5.20e-18 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2454 - - aip:107622497 132.88