Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2444 ATGTTACTTTTGTTCAGGAATAGAAAGAAAAAGCAGCAGCAGCAGCAGAAGAATCTGCATACACATCAATCTGAGGAATCATCACCTTGTGTTGGAGCTAAGAAATCAGGTTCTCATGTCATCAAAGTGCTGCCAAATCCATCAAAGCTAACAGAGGGAGGTGGAGATTTCGGCCCTGTGAATGGCATTTTCACATATGATGAGCTAGTAGCAGCCACTAAGAGTTTCTCTGAAGCCAACCTTCTTGGGGAAGGTGGATTTGGTTATGTATATAAAGGAATTCTTCCAAGTGGAAAGGAAATTGCAGTTAAACAGTTGAAATCAGGAAGCCAGCAAGGAGAGCGAGAATTTCAGGCCGAGGTTGAGACCATTAGCCGGGTGCATCACAAGCATCTTGTTGAGTTGGTTGGATACTGCGTTACCATGTCTGAAAGAATGCTTGTTTATGAATTTGTTCCAAATAACACATTGGAATTCCATTTACATGGGGAAGGGAAGCCCGTTGTACGGTGGGAGAAGAGAATTAAGATTGCCCTGGGATCTGCAAAAGGGCTCGCATATCTACATGAAGATTGTAATCCAGCAATCATTCACCGTGATATTAAAGCATCTAACATCCTTCTGGACTTCAATTTTGAAGCAAAGGTTTCTGACTTCGGCCTAGCAAAGATCTTCCCCAACAACGCTGATGGTTGCATCACTCACCTCACCACCCGAGTCGTGGGAACCTTTGGGTATCTGGCTCCAGAATATGCATCAAGTGGTAAACTAACAGATAAATCAGATGTATATTCCTATGGAGTGATGCTTTTAGAACTCTTAACTGGACGTCCAGCAATCAGTACAGAAGGATCAAGAAACGTGAGCTTGGTTGATTGGGCTAGGCCCTTGCTTGCGCAAGTGCTAGAAGATGGTGATATCAGTGATCTTGTTGATCCAAGGTTGCAGAATAATTATAAAGCTGATGAGATGACTAGAATGATTACCTGCGCAGCCGCCTGCGTGCGCCATTCAGCCAGCCTTCGACCCCGTATGAGCCAAATTGCAGGTGCCTTAGAAGGATTGGTTTCTCTGTCGGATCTTGTAGGCGACATTACGCCGGGGCATACCAGAATATACAGTTGGCCAGAGAGTTCAACTTATGATGCCTGCCAATACCAACAGGACTTGAGAGACTTCAATTTGGGATTATCATCTCAACAGTGCAGCTCAAGTGTGCATAGTGAAATGACTAGTGCTTATGGTCTTTGCCTATCTGACTCAAGTAGTGAAGGTTAA 1278 0.4421 MLLLFRNRKKKQQQQQKNLHTHQSEESSPCVGAKKSGSHVIKVLPNPSKLTEGGGDFGPVNGIFTYDELVAATKSFSEANLLGEGGFGYVYKGILPSGKEIAVKQLKSGSQQGEREFQAEVETISRVHHKHLVELVGYCVTMSERMLVYEFVPNNTLEFHLHGEGKPVVRWEKRIKIALGSAKGLAYLHEDCNPAIIHRDIKASNILLDFNFEAKVSDFGLAKIFPNNADGCITHLTTRVVGTFGYLAPEYASSGKLTDKSDVYSYGVMLLELLTGRPAISTEGSRNVSLVDWARPLLAQVLEDGDISDLVDPRLQNNYKADEMTRMITCAAACVRHSASLRPRMSQIAGALEGLVSLSDLVGDITPGHTRIYSWPESSTYDACQYQQDLRDFNLGLSSQQCSSSVHSEMTSAYGLCLSDSSSEG* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2444 425 MobiDBLite consensus disorder prediction 17 31 - -
Amo10g2444 425 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Amo10g2444 425 Gene3D Phosphorylase Kinase; domain 1 57 151 - -
Amo10g2444 425 Gene3D Transferase(Phosphotransferase) domain 1 152 361 - -
Amo10g2444 425 CDD STKc_IRAK 82 355 - -
Amo10g2444 425 MobiDBLite consensus disorder prediction 1 33 - -
Amo10g2444 425 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK14 11 398 - -
Amo10g2444 425 Pfam Protein kinase domain 77 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo10g2444 425 ProSitePatterns Protein kinases ATP-binding region signature. 82 104 IPR017441 GO:0005524
Amo10g2444 425 SUPERFAMILY Protein kinase-like (PK-like) 62 352 IPR011009 -
Amo10g2444 425 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 11 398 - -
Amo10g2444 425 ProSiteProfiles Protein kinase domain profile. 76 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo10g2444 425 SMART serkin_6 76 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2444 Amo-Chr10 85726907 85730752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2444 61 424 Trihelix Transcription Factor Family AT4G32710 60.274 7.98e-139 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Amo10g2444 Pkinase 1.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2444 - - adu:107470979 828.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo10g2444 10 85726907 85730752 Amo20g3014 20 132778817 132783217 hybridization