Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2431 ATGACTTCGCCATTTACTTTCTTTTGGGAAGTGTCATCTCCCCCATTGTTACAAGAAGAGGAGGCAGATTTGCAACATTATCTAACCCTCATGAGAGATCAAATAACAGATTACTTCATTCTCAAGGTACAAGTTACGCATCAAACTTGCTGGACTCATCATCAACAACCACAATCACATCCACCAGTGTTAGGAGCCATTGATTCGTTTGCATCCTCAATTCTAATCCAAGCGCAAGKATTCCTTCAAAACGGTTCATCACACATGCAAATGCACTTCCCTGATGCTATTATACCAATCGTCTTGATTGATAACATGATGCCAGATATCATATCCTACGCAAAAGCCATAATTCAAACTCGTCGTTCCGGATTCCTCTATGAAAGACCTGATTTTCGTTTGTTCAGTTTGAATTTGGACATTATTATCCAGAATTCTATATTGTACGTTCAAGACTTGAGTATCCAGAATTTGTCATTGGAAGTTGATGACTACGACAACATGATCACCGACTTAATCGTTGAAGAGTCAATGGGAGATACTAATAATATTAAGATGGTTCCTGCGTCGAAGAATGCCATTGAGTCTCTTGAGAAAGTGAAGCTTGAGAATAATAACCACCTAGTAGAGAGGTGCACTATTTGTCTAACTGAATTTGATTATGATGATGATACAGAACAAGTTTCATCAATGCCTTGTAAGCATGTATATCATCAAGAATGCCTCGRGCAATGGCTCAAGACTAGTCATTTATGTCCTTTATGTCGGTATCCGATGCCAACTAATTAG 789 0.3853 MTSPFTFFWEVSSPPLLQEEEADLQHYLTLMRDQITDYFILKVQVTHQTCWTHHQQPQSHPPVLGAIDSFASSILIQAQXFLQNGSSHMQMHFPDAIIPIVLIDNMMPDIISYAKAIIQTRRSGFLYERPDFRLFSLNLDIIIQNSILYVQDLSIQNLSLEVDDYDNMITDLIVEESMGDTNNIKMVPASKNAIESLEKVKLENNNHLVERCTICLTEFDYDDDTEQVSSMPCKHVYHQECLXQWLKTSHLCPLCRYPMPTN* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2431 262 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 175 261 IPR013083 -
Amo10g2431 262 Pfam Ring finger domain 211 256 IPR001841 -
Amo10g2431 262 SMART ring_2 212 255 IPR001841 -
Amo10g2431 262 ProSiteProfiles Zinc finger RING-type profile. 212 256 IPR001841 -
Amo10g2431 262 SMART ringv_2 211 256 IPR011016 GO:0008270
Amo10g2431 262 PANTHER F6A14.12 PROTEIN-RELATED 98 261 - -
Amo10g2431 262 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 98 261 - -
Amo10g2431 262 SUPERFAMILY RING/U-box 193 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2431 Amo-Chr10 85476938 85477726 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2431 174 260 C3H Transcription Factor Family AT1G18760 41.379 5.91e-19 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2431 - - adu:110276959 525.013