Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2430 ATGGCTTCAGTCGCTAACGCTGGTGCGGAAGCAACAACTTTCTTCAGTTACTCTCAGCTTCGCCGAAGACGTTGTTTCTGCGAGATCGGTTTAAAGGTGAATGGAGCAGAGCGAAACGGCTTTGGATCTAGCTCCGAGGAAATTGGTGAGGCAGTTGGATTTCACAGCACACCTGAAACTGGCGCCGACTCCGCCGCCGCAGTCGCTGGCACAGGCGATTCCGCGAACGCCATCACGATCACCGTTGCAATTGCAATTGACTCTGCATCCGCTAGGGCAACAGCAACAACAGCAGCAACAACCGCAGCCGTGGTTGTTTTCGCAGGGACAGCAGCTGAGAGTGCCGCCGCAGTCGCCAGCGGTGCGGCAGCAAAAGCTTTCGCCGGTTCCTCGAATTCCGTACACTGTGCAGAAGCTTCCGGTAAAGGCGTTCAAAGTGTCGAGTCTCCCAGTCCCAGATCACAACCTTGGTATAATGTTGAATTAAAAGACAGCACTCCAAAGAAATCAAAACAATGTAACTGCAAAAATTCTCGATGCCTCAAATTGTACTGTGAATGCTTTGCATCTGGGATGTATTGTGATGGTTGCAATTGTACAAATTGTCAAAACAATGTGGATAATGAGGCAGCTAGACAGGAGGCTGTTGGACTTACATTAGAGCGCAATCCAAATGCTTTCAGACCAAAAATTGCTAGCAGTCCACAAGAAACTCGAGATTCCAAGGAAGATGTGTCTGAAATTCAATTAGTTGGAAAGCACAATAAAGGATGTCACTGTAAAAAATCAGGTTGCCTTAAGAAGTATTGTGAGTGCTTCCAAGCCAATATCCTCTGCTCTGAAAATTGCAAATGCATGGACTGCAAGAATTTTGAAGGAAGTAATGAAAGAAGAGCAAGTTTTCATGAAGAGTGTAATATGTTTCGCATCAAACAGGAAGCAAATGCTGCCATCAGTGGAGCAGTTGGTTTCTCTGGCTACGGGACTGGAATTGCCATAACACCCAAGAAAAGAAAAATTCAGGAAATATTTTCTAGCAAATCGTCGATAGATAAAACTGTTTGCCAAACAACTCAATATCAACAGGAAACTGATCCTATAGTTACACCACCGACATCTCAGTCAACTTTCTTTTATGTTGACACTGCCAACACTAGAAATTCAGGTTATTCAAGATCTACATACAGGTCACCATTGGCGGATGTCCTCCAGCCACAAAATGTGAAGAATCTCTGTTCACTTTTTGTTGTTCTCTCAGGAGTAGCTGCCAAGACAAATGCAGCAAAGAGTACTAGGGTTTATGATAAAAATGAACATGTTTTGGAATACAAATTTATTACAGATTTTTTGCTTTTGGAAATTTCTGAATTTTTTCCTCCTTGCAATGATGACACGTCACCTTGCTCAAGTCTATCTTGTGCTCCTTTGAACTTGAACCCTTGTATTTGCCCTTGCTCTTCATCATCCTTCTAA 1473 0.4372 MASVANAGAEATTFFSYSQLRRRRCFCEIGLKVNGAERNGFGSSSEEIGEAVGFHSTPETGADSAAAVAGTGDSANAITITVAIAIDSASARATATTAATTAAVVVFAGTAAESAAAVASGAAAKAFAGSSNSVHCAEASGKGVQSVESPSPRSQPWYNVELKDSTPKKSKQCNCKNSRCLKLYCECFASGMYCDGCNCTNCQNNVDNEAARQEAVGLTLERNPNAFRPKIASSPQETRDSKEDVSEIQLVGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSNERRASFHEECNMFRIKQEANAAISGAVGFSGYGTGIAITPKKRKIQEIFSSKSSIDKTVCQTTQYQQETDPIVTPPTSQSTFFYVDTANTRNSGYSRSTYRSPLADVLQPQNVKNLCSLFVVLSGVAAKTNAAKSTRVYDKNEHVLEYKFITDFLLLEISEFFPPCNDDTSPCSSLSCAPLNLNPCICPCSSSSF* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2430 490 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 141 436 - -
Amo10g2430 490 PANTHER TESMIN/TSO1-RELATED 141 436 IPR028307 -
Amo10g2430 490 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 171 205 IPR005172 -
Amo10g2430 490 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 256 290 IPR005172 -
Amo10g2430 490 SMART CXC_2 253 294 IPR033467 -
Amo10g2430 490 SMART CXC_2 168 208 IPR033467 -
Amo10g2430 490 ProSiteProfiles CRC domain profile. 169 293 IPR005172 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2430 Amo-Chr10 85459917 85464249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2430 148 441 CPP Transcription Factor Family AT4G29000 58.472 7.34e-108 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Amo10g2430 TCR 2.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2430 - K21776 gmx:100811459 444.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo10g2430 10 85459917 85464249 Amo20g2992 20 132222917 132227693 hybridization