Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2418 ATGACGAAAATCGCTCTAGGGACCACCCGAGAGGCTACCCAACCCGATTGCATTCGGGCCCTCGTTGTCGAGTTCATAGCCACCTTCCTGTTTGTCTTCACCGGCGTTGCTTCCGCCATGGCCGCCGAAAAGCTTAGTGATGGAGATGCACTATTGCCTTTGGTTGCTGTGGCCGTGGCAAGTGCATTTGTGGTGGCTGTGATGATTTCATCCGGTCATATCTCCGGCGGGCACCTCAACCCTGCCGTGACCCTTGGGCTGCTGGTCGGCGGGCACATCACGGTGGTCCGATCGGTCCTTTATTGGATAGATCAGTTGGTAGCATCTGCAGCAGCTTCTTACCTTCTTTGCTACCTTTCCGGGGGACTGGCAATTCCAGTTCATACTCTAGCAAGTGGAGTTGGGTACAGTCAAGGYGTGATTTGGGAGATAGTGTTGACTTTCTCATTGTTGTTTACTGTCTATGGAAATATGGTGGATCACAAGAAGGGAGTTCCTACTGGACAGGGGCCCACAATAGTCGGGTTTGTTGTTGGGGCCAATATCCTCGCTGGTGGAGCTTTTTCTGCWGRCTCAATGAACCCAGCAAGATCTTTTGGGCCTGCATTGGTCATGGGTAACTGGACCGGTCATTGGATTTATTGGGTTGGGCCTCTTATTGGTGGAGGCCTTGCAGGCTTCATCTACGAGCATTTTCTCATTGACCGTACGCATACTTTACTCCCTCTTGATGAAGAAAACTAA 744 0.5121 MTKIALGTTREATQPDCIRALVVEFIATFLFVFTGVASAMAAEKLSDGDALLPLVAVAVASAFVVAVMISSGHISGGHLNPAVTLGLLVGGHITVVRSVLYWIDQLVASAAASYLLCYLSGGLAIPVHTLASGVGYSQGVIWEIVLTFSLLFTVYGNMVDHKKGVPTGQGPTIVGFVVGANILAGGAFSAXSMNPARSFGPALVMGNWTGHWIYWVGPLIGGGLAGFIYEHFLIDRTHTLLPLDEEN* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2418 247 Gene3D Glycerol uptake facilitator protein. 2 241 IPR023271 -
Amo10g2418 247 PANTHER AQUAPORIN-8 2 246 IPR034294 -
Amo10g2418 247 PRINTS Major intrinsic protein family signature 175 197 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo10g2418 247 PRINTS Major intrinsic protein family signature 60 84 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo10g2418 247 PRINTS Major intrinsic protein family signature 142 160 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo10g2418 247 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo10g2418 247 PRINTS Major intrinsic protein family signature 212 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo10g2418 247 PRINTS Major intrinsic protein family signature 97 116 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo10g2418 247 ProSitePatterns MIP family signature. 78 86 IPR022357 -
Amo10g2418 247 PANTHER AQUAPORIN TIP4-1 2 246 - -
Amo10g2418 247 Pfam Major intrinsic protein 12 229 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo10g2418 247 SUPERFAMILY Aquaporin-like 11 241 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2418 Amo-Chr10 84744030 84746646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2418 1 246 Major Intrinsic Protein MIP AT2G25810 72.764 2.27e-117 333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo10g2418 10 84744030 84746646 Amo20g2916 20 130707531 130710062 hybridization