Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2413 ATGATCATTAAGAACCATTTCTTCATGTCCATGATCATGTTCACATTCACCATGGTTTATTTTCTTTTCAGTGTTGTTCATGCTCAAAACAACGATGAAGACATGGCACCTGAGATGTCTGATACACTGCATCCAAGCAAGGCTCTTGTTATATCGGTCCTCACCGTAATCTTCACCATAACATTCTTCTTACTCGCATATGTTCGTTTCTGCAGATTCAATCCAGTTGTTGGGATGTCGTATCCGAATCCCAACAACATTCAAGGTAATATCTTGACCCGAAACGGGTCAAGATTCTCCGGAATCAACAGGGAACTCGTCGAAAAACTCCCCTTCTTCAGATTCTCTTCTCTCAAGGGCTCCAAAGAAGGTCTAGAATGTACCGTTTGCCTCTCGAAATTCGAGGATTCCGAGGTCCTCAGACTACTCCCAAAGTGCCAACACGCTTTCCACATTAATTGTATTGACAAGTGGCTCGAAAGCCACTCGACTTGTCCTCTTTGCAGGTACAGGGTGGAACCCGGAGACATCAAAAGTAACGTGCGCTCTCTTAGCTTCGGGTCCCTCCGAGTACCTTCAAATTTAACGGAAGAATCAAACCTCGAGATCTACATCCAAAGGGAACCATCACATCGACGGTCATCAAGATTTGGCTTCTTGGAATTCAGCAAGAGCAAGAAACAAGAAGAAGAAGGTGGTAGTGGTAGTAATAGTAATAATAACAATGATATGAATAAGAATAACCACAAGTTCAACCACAGAATAGTGATATCTGACGTTGTAACAAGAAGTAGGTGGAGCGATCTAAACTCTTCGGATTTGCTATCTTTGAGCATGGAGATGCTCAACGATGCTTCCAGCGCGAGATTCTCACCGGAAAAGATTGTTCAAGGGGAATATTCAGTTAGTGTCGATGATGAAGACGAGAATTCATTCACAGCACTGAATAGTAGTAACAAGAACAAGGATTGTGGGGAGAAGAGATCAATGTCTGAGATTGCAAATGTTCCGAGATTTGCAGAGATCATGACGATGAAAAAGCAGAACAGTAGTAGTGGCGGTGTTGGAAGGGAAGAAGAGAGGTTCTTGAGGATTTGGATGCCGATTGCTCGTAGAACGGTTCAGTGGTTTGCAAGAAGACAAAGAAACTACTATGATGCTGGTGATGAATTAAGGAGGCACAAACATTTAGGATCAAATGTTTGA 1206 0.427 MIIKNHFFMSMIMFTFTMVYFLFSVVHAQNNDEDMAPEMSDTLHPSKALVISVLTVIFTITFFLLAYVRFCRFNPVVGMSYPNPNNIQGNILTRNGSRFSGINRELVEKLPFFRFSSLKGSKEGLECTVCLSKFEDSEVLRLLPKCQHAFHINCIDKWLESHSTCPLCRYRVEPGDIKSNVRSLSFGSLRVPSNLTEESNLEIYIQREPSHRRSSRFGFLEFSKSKKQEEEGGSGSNSNNNNDMNKNNHKFNHRIVISDVVTRSRWSDLNSSDLLSLSMEMLNDASSARFSPEKIVQGEYSVSVDDEDENSFTALNSSNKNKDCGEKRSMSEIANVPRFAEIMTMKKQNSSSGGVGREEERFLRIWMPIARRTVQWFARRQRNYYDAGDELRRHKHLGSNV* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2413 401 ProSiteProfiles Zinc finger RING-type profile. 127 169 IPR001841 -
Amo10g2413 401 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 17 387 - -
Amo10g2413 401 CDD RING-H2_PA-TM-RING 126 169 - -
Amo10g2413 401 SUPERFAMILY RING/U-box 106 174 - -
Amo10g2413 401 MobiDBLite consensus disorder prediction 232 246 - -
Amo10g2413 401 Pfam Ring finger domain 126 169 IPR001841 -
Amo10g2413 401 PANTHER RING-H2 FINGER PROTEIN ATL4J 17 387 - -
Amo10g2413 401 SMART ring_2 127 168 IPR001841 -
Amo10g2413 401 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 176 IPR013083 -
Amo10g2413 401 MobiDBLite consensus disorder prediction 225 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2413 Amo-Chr10 84550066 84551549 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2413 40 383 C3H Transcription Factor Family AT2G20030 44.167 7.71e-83 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2413 K10664 - gmx:100803881 322.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo10g2413 10 84550066 84551549 Amo20g2903 20 130440305 130441836 hybridization