Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2393 ATGGCACTCTTCAAGGCTCTCCACTGCCACTTCGCCGCCACGGATCCTCATCGCCTTCCTCTTCTCCGCCGCAGCCTCAAATGCGCAGTCAATTCCTACGCCTCCCGCCACATTCCGAGCTCACCCACGGTTTTCAGTTTCTCGTCGTCGCTCAATGCATTCCGCGTGCTGCTTCCGCCGCGACCTCCGTGCCGTTTACGGTGCGTTTCAAGCTCCGTCGCTTCCTTCGCTTATGAAGCCGGCGGCGAGTCTGGAGACGGTAGCGTGAAGTTAGTTGGAGACGCGACTCAGGAGGTTTCGGCGCTTTCACCTGATGTGATCATTCTCGATGTTTCGGGAATGACGTGCGGTGGATGTGCTGCGACTATAAAGAGGATTCTGGAAATGTCATCTGCTAGTGTGAATCTAACTATAGAGACAGCAATAGTTTGGCCTGTATCTGAAGCGAAAAAAGCACCAAATTGGCAGAAGCATTTAGGGGAGGCACTTGCAGAGCATTTGACTAACTATGGATATAGCTCCAGCCTTCGAGCTTGGTGGGTTAAGTGGCAGAGTGGTTGTCTGGAGTCAATGGTGAGTCTCCATGGATTCTTGAGGGTATTGGAGTTCCGTGACACTCTTCTGGCAGCCCTGCATGATGACGGATTTACTGATGTTGACTCTGAAAGTAGCAACCCTTTAGTTATCAAGAATTATGAGGACTCTTGTCCATATGTTCTATCTGGAGTGAAATCAGATGGGAAAAAGAAGTTCATAAATGAACTACAGAAAGATCAGAAGATTGTAGCTATGGTTGGTGATGGAGTTAATGATGCAGCTGCCCTGGCTTCTTCACATATTGGTATCGCATTAGGTGGAGGTGTTGGAGCTGCTAGTGAGGTGTCTTCTATTGTATTGATGTGCAACCAGCTCTCACAGTTAGTTGATGCTTTGGAGCTCAGCAGGCTAACCATGAATACTGTAAAACAAAATCTTTGGTGGGCCTTCATATACAACATTGTAGGGATTCCAATTGCTGCTGGAGTGTTATTCCCTATAAATGGAACCATGCTGACTCCATCAATTGCTGGGGCTCTCATGGGGTTGAGTTCCATCGGTGTAATGACCAACTCGTTACTTTTAAGATTCAGATTTTCTGCAAAGCAGAAACAAATACATGGCATGTTGCCGAAGACCAAAATCTATGCAGATTCTGACCTGGAAAACCAAAACCAGAAACTGAAATACCGGTATTAG 1236 0.4733 MALFKALHCHFAATDPHRLPLLRRSLKCAVNSYASRHIPSSPTVFSFSSSLNAFRVLLPPRPPCRLRCVSSSVASFAYEAGGESGDGSVKLVGDATQEVSALSPDVIILDVSGMTCGGCAATIKRILEMSSASVNLTIETAIVWPVSEAKKAPNWQKHLGEALAEHLTNYGYSSSLRAWWVKWQSGCLESMVSLHGFLRVLEFRDTLLAALHDDGFTDVDSESSNPLVIKNYEDSCPYVLSGVKSDGKKKFINELQKDQKIVAMVGDGVNDAAALASSHIGIALGGGVGAASEVSSIVLMCNQLSQLVDALELSRLTMNTVKQNLWWAFIYNIVGIPIAAGVLFPINGTMLTPSIAGALMGLSSIGVMTNSLLLRFRFSAKQKQIHGMLPKTKIYADSDLENQNQKLKYRY* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2393 411 PANTHER COPPER-TRANSPORTING ATPASE PAA1, CHLOROPLASTIC 238 367 - -
Amo10g2393 411 SUPERFAMILY HMA, heavy metal-associated domain 107 148 IPR036163 GO:0046872
Amo10g2393 411 PANTHER ATP7, ISOFORM B 238 367 - -
Amo10g2393 411 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 243 346 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo10g2393 411 SUPERFAMILY HAD-like 238 372 IPR036412 -
Amo10g2393 411 Gene3D - 203 324 IPR023214 -
Amo10g2393 411 Pfam haloacid dehalogenase-like hydrolase 239 277 - -
Amo10g2393 411 PANTHER COPPER-TRANSPORTING ATPASE PAA1, CHLOROPLASTIC 86 175 - -
Amo10g2393 411 CDD HMA 109 160 IPR006121 GO:0046872
Amo10g2393 411 PANTHER ATP7, ISOFORM B 86 175 - -
Amo10g2393 411 Gene3D - 106 177 - -
Amo10g2393 411 ProSiteProfiles Heavy-metal-associated domain profile. 106 176 IPR006121 GO:0046872
Amo10g2393 411 PRINTS P-type cation-transporting ATPase superfamily signature 288 300 - -
Amo10g2393 411 PRINTS P-type cation-transporting ATPase superfamily signature 265 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2393 Amo-Chr10 83197676 83202745 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2393 90 177 Primary Pumps ATPases AT4G33520 63.043 3.95e-31 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2393 K17686 - ahf:112717811 334.339