Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2367 ATGATGGCGGTGAGTTCGGGGAGCAAAGAAGGAGGAGGGAGTAAGGTGATGATGGACAACGGCAAGTACGTGAGGTACACGCCGGAGCAGGTGGAGGCACTGGAGAGGCTCTACCATGAATGCCCCAAACCAAGCTCCCTTCGCCGCCAGCAACTCATCAGAGACTGCCCTATTCTCTCCAACATCGAGCCCAAACAGATCAAAGTCTGGTTCCAAAATCGAAGATGCCGAGAGAAGCAGCGGAAAGAGGCGTCACGGCTGCAAGCTGTAAACAGGAAGCTGACAGCAATGAATAAACTGCTGATGGAGGAAAACGACAGATTGCAGAAGCAAGTCTCTCACCTCGTCTATGAGAACACCTTTTTCCGCCAACACACTCAACAAAATCAGGCGGCGCTTGCCACCACAGACACCAGCTGTGAGTCGGTGGTAACAAGCGGTCAGCGCAACTTGACACCTCAGCATCCGCCAAGGGATGCAAGCCCTGCAGGACTTTTGTCGATTGCAGAGGAGACTTTAGCAGAGTTTCTATCAAAGGCCACTGGAACCGCTGTGGAGTGGGTCCAAATGCCTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCCCTGGAGTGGCAGCACGTGCATGCGGCCTTGTGGGTCTAGAACCTGCCAGGGTTGCAGAAATACTCAAAGATCGGTTATCATGGTATCGTGATTGCCGAACCGTGGATGTTCTAAATGTAATGTCCACGGGAAATGGAGGAACCATTGAACTTCTTTACATGCAGTTGTATGCTCCAACAACCTTGGCACCTGGCCGTGACTTCTGGTTGCTGCGCTACACATCTCTTTTGGAGGATGGTAGTCTTGTGGTGTGTGAAAGATCACTTAACAACACTCAGAACGGTCCTGCTATGCCAGCAGTGCAGCATTTTGTTAGAGCAGACATGATGCCAAGTGGGTATCTTATTAGGCCTTGTGAAGGAGGAGGGTCCATTATTCATATTGTTGATCACATAATCTTAGAGCCATGGAGTGTACCTGAAGTTTTGCGTCCACTTTATGAATCGTCAATGCTACTTGCTCAAAGAACAACCATGGCGGCTTTACGGCATTTAAGGCAGATATCTCAAGAAGTTTCTCAGCCAAGTGTGTCAGGATGGGGAAGAAGGCCTGCGGCTCTACGCGCGCTTAGTCAGCGATTGAGCAAGGGATTCAATGAAGCAGTTAATGGTTTTACTGATGATGGGTGGTCCTTGTTGGAGAGTGATGGCATTGATGATGTCACGCTTCTTGTGAACTCATCACCTAGCAAGATGATGGGAGCAAACCTCGGCTACAATGGTGGTGGATTCGCATCTGTCACTAGTTCTGTGCTTTGTGCCAAAGCATCCATGTTGTTGCAGAATGTCCCTCCAGCAATTCTTCTTAGATTCTTGCGGGAGCACCGGTCTGAGTGGGCTGATAGCAGCATTGACGCTTATTCGGCTGCCGCCATCAAAGCTGGTCCCTGTAACTTGCCTGGTGTCCGAGCAGGCGGTTTCGGGGGTCAGGTCATTCTTCCATTGGCTCACACAATTGAGCATGAAGAGTTCATGGAGGTGATTAAGCTTGAAAACATGGGTTACTATAGGGATGATATGACTATACCTGGTGATGTTTTCCTCTTGCAGCTCTGCAGTGGAGTGGATGAGAATGCAGTTGGCACAAGTGCAGAACTCATATTTGCTCCCATTGATGCATCCTTTTCTGATGATGCACCAATTTTACCTTCCGGCTTTCGCATCATACCTCTCGATTCAACCTCGGATGCCGCTAGTCCTAACCGGACGCTTGATCTGGCGTCGGCGCTGGAAGTTGGAACAGCAGGGAGCAAAGCTGGCGGAGAAAACTCAAGCCATTCCGGGAGCACAAAGTCGGTGATGACAATTGCATTTCAGTTTGCATTTGAAGTCCATCTTCAGGACAACATTGCAACCATGGCTAGGCAGTATGTTAGGAGTATCATTGCATCTGTTCAAAGGGTTTCACTAGCCCTTTCGCCGTCCCGATTCGGTTCTCAAAATGCTTTCCATTTGCCTCCTGGTACCCCTGAGGCACAAACACTTGCTAGGTGGATTTCTAGCAGCTATAGATTCTATCTTGGGGTAGAACTGTTGAAGAGTGAGGGCAATGAACCCATTCTCAAATCTCTTTGGCATCACACTGATGCTGTTTTGTGCTGCTCTCTCAAGGCATTACCTGTTTTCACTTTTGCAAATCAAGCTGGCCTTGACATGCTAGAAACAACTTTGGTTGCACTTCAAGACATCACTCTTGAAAAGATCTTTGATGACAATGGAAAGAAAACTCTGTGCTCTGAGTTCCCCCAGATAATGCAGCAGGGTTTCATGTGTATACAAGGTGGGATATGTTTGTCGAGCATGGGAAGGCCAGTGTCATATGAGAGAGCAGTGGCATGGAAAGTCTTGAATGAAGAAGAAACGGCTCACTGTATCTGCTTCATGTTCATCAATTGGTCCTTTGTCTGA 2535 0.486 MMAVSSGSKEGGGSKVMMDNGKYVRYTPEQVEALERLYHECPKPSSLRRQQLIRDCPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSHLVYENTFFRQHTQQNQAALATTDTSCESVVTSGQRNLTPQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPARVAEILKDRLSWYRDCRTVDVLNVMSTGNGGTIELLYMQLYAPTTLAPGRDFWLLRYTSLLEDGSLVVCERSLNNTQNGPAMPAVQHFVRADMMPSGYLIRPCEGGGSIIHIVDHIILEPWSVPEVLRPLYESSMLLAQRTTMAALRHLRQISQEVSQPSVSGWGRRPAALRALSQRLSKGFNEAVNGFTDDGWSLLESDGIDDVTLLVNSSPSKMMGANLGYNGGGFASVTSSVLCAKASMLLQNVPPAILLRFLREHRSEWADSSIDAYSAAAIKAGPCNLPGVRAGGFGGQVILPLAHTIEHEEFMEVIKLENMGYYRDDMTIPGDVFLLQLCSGVDENAVGTSAELIFAPIDASFSDDAPILPSGFRIIPLDSTSDAASPNRTLDLASALEVGTAGSKAGGENSSHSGSTKSVMTIAFQFAFEVHLQDNIATMARQYVRSIIASVQRVSLALSPSRFGSQNAFHLPPGTPEAQTLARWISSSYRFYLGVELLKSEGNEPILKSLWHHTDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDNGKKTLCSEFPQIMQQGFMCIQGGICLSSMGRPVSYERAVAWKVLNEEETAHCICFMFINWSFV* 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2367 844 CDD homeodomain 22 82 IPR001356 GO:0003677
Amo10g2367 844 PANTHER CLASS III HD-ZIP PROTEIN CNA1 8 844 - -
Amo10g2367 844 SUPERFAMILY Bet v1-like 167 378 - -
Amo10g2367 844 Pfam MEKHLA domain 703 843 IPR013978 -
Amo10g2367 844 CDD bZIP 74 113 - -
Amo10g2367 844 SUPERFAMILY Homeodomain-like 21 85 IPR009057 -
Amo10g2367 844 SMART START_1 167 377 IPR002913 GO:0008289
Amo10g2367 844 CDD START_ArGLABRA2_like 162 377 - -
Amo10g2367 844 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 8 844 IPR044830 GO:0003700
Amo10g2367 844 ProSiteProfiles 'Homeobox' domain profile. 17 81 IPR001356 GO:0003677
Amo10g2367 844 ProSiteProfiles START domain profile. 158 386 IPR002913 GO:0008289
Amo10g2367 844 Coils Coil 77 111 - -
Amo10g2367 844 Gene3D - 202 383 IPR023393 -
Amo10g2367 844 Gene3D - 14 88 - -
Amo10g2367 844 Pfam Homeodomain 22 80 IPR001356 GO:0003677
Amo10g2367 844 SMART HOX_1 19 85 IPR001356 GO:0003677
Amo10g2367 844 Pfam START domain 168 376 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2367 Amo-Chr10 82569253 82575455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2367 11 844 Homeobox Transcription Factor Family AT4G32880 79.952 0.0 1398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Amo10g2367 START 1.1e-51 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2367 K09338 - gmx:100797291 1570.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo10g2367 10 82569253 82575455 Amo20g2847 20 128840772 128846941 hybridization