Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2314 ATGGATTCATCAAACCAGAACCAACCTTGTCCCAACCGAACCTTTAATCACTTATACACAAAACCTTGTGCTGAGGAATCAGAATCAGGTTCACTCCCTTTCGAGACACCCCAGACCATGGACCCTAGAGGGTATCAATTAGAAGTATTTGAAGTTGCAAAGAAGAGGAATACAATAGCAGTATTGGATACAGGTGCTGGTAAGACATTAATAGCTGTGTTGCTTATGAAGAACATTGGTCAAGCTATCAGGTCCAGTGGCTCCAAAAAGTTGATTATTTTCTTAGCTCCAACCGTTCATCTTGTCAACCAGCAATATAAGAATATAAGAGATCTTACAGATTTTCAAGTTCAGGAGTATTATGGGGCAAAAGGAGTGGACGCATGGGATTTAAGTATCTGGGAGAAGGAAATTAGTGAAAATGAGGTACTGGTTATGACACCCCAGCTTCTTTTGGACGCTCTAAGAAAGGCTTTCTTGAAGATGGAATCAATATGCTTGATGATTATTGATGAGTGTCATCGAGCAACTGGTAACCATCCCTATGCAAAAGTAATGAAGGAATTCTATCACAAGGCTGATGAAAAGCCTAAAATTTTTGGAATGACAGCATCACCAGTAGGTAAAAAAGGTGTTTCCTCTTCTGTGGATTGTGAGGGTCAGATATCAGAACTGGAAAGTATCTTGGATTCTCGGAGATATACTGTAGAAGATAGGACCGAGATGGAGGTATATATACCTTCTGCAAAAGAAAGTTGTAGATATTATGACCAGGCACAATTCCCTGATTTGAATTTGAAGCCAAAGATTGAAGACTTGTGGTCCAAGTCTGGTGCATTGTTATCGGAATTACAAAGCTCAACTGATGGTAACTCTAAGGATGTGGAGAATAAATTAAATACGCTGCATAAGCGGATGTCCAATGAACTTGCAAGAGCTGTTAAAATATGGCATGAAAATTTCTCCAAAGTCGAAGGAGAGTGTGAAGTTTACCAAAAAGGTTTTAGTCAGTGCAAAGCATTCATTGACGTAGTCATGCAAATAGTTGAAGAATCCCTCCATCTTGATGATAACAAGATTCCAGAGCTTGATCTTAATTTTTCAAAGGCAGTAGACCTGGGATACTTATCTCCCAAATTACTTGAACTTATTAAACTCTTCCAGTCATTTGGACATTCATGTGAGGTATTGTGCCTTGTTTTTGTCGAAAGAATCATCACAGCAAAGGTGATTGAAAGATTTATAAAGAAAGTTCCACAGATATCTCATTTTACAGTTTCCTATTTAACCGGAAACAATACGTCAGCTGGTTCACTGACTGCTAAGAAGCAGAAGGAAACATTGGATTCTTTTCGTTCTGGAAAGGTCAATATATTATTTACAACCGAGGTAATTGAGGAAGGAATTCATGTGCCAAAGTGCTCATGTGTGATACGTTTTGACCTACCGAACACATGTCGCAGTTATGTCCAGTCTCGGGGAAGATCTAGGCAGGATGACTCCCAATTTATTGTGATGTTGGAGAGGGGAAACATGGATCAAAGAAATAAACTGTTTGACATCATCAGGAGTGAGCGATCCGTGACTGAAGCGGCTATATATAAAGAAGATCATGCTTCTAATTTAAGGGTGATTACGGAAGTAAAATCAAATATATATTATGTTGAGTCTACTGGAGCATCAGTCAACTTGGACTCAAGTGTTAGTCTTTTAAATCGATATTGTGAAAAGCTCCCATGTGATGAGTACCCCCGTGCAAAGCCCAATTTTGAATTCCTGCCTTTTGAAGGGGCATACAGGTGTAAATTAACATTACCACCTAATGCAGCTTTCCAAACAATAGTCGGTCCCTTGGGTAAAGATGTCCGTTTGGCAAGGAATCTTGTCTGTTTAGAAGCTTGTAAGAAGCTGCATCAGATGCATGCCTTGAATGATCATCTTGTCCCTTTCACTGAAAAGCCTCCAAAAGCTGAACATAGCGTGCAAAACAAAGAATCTGGTACAGGATCAGGTGCAGGAACCACAAGAAGAAAAGAATTACATGGCACAGCCAGCATTCGAGCTTTATGTGGTACAATTGAAGACAAACTAGACGGAGCCAAATTTTATGCCTATAGATTTGATTTCAAATGCAGCATTGTCGGTGAAATCTTCTCAGGATTTGTTCTCCTGATTGAGTCAAAGTTTGACGATGATGTTGGAAATATTGAATTAGATCTTTATTTGATAAAAAAAACCGTAAAGGCTTCCTTATCTTTCTGTGGACAAGTTTATTTGAATGCTGAACAGATGATGTATGCAAAATGCTTCCATGAGGTTTTTTTCAATGGTTTGTTTGGGAGATTGGTTCATAAGTCCAAATCAGTAAAAGGAGAGAGGGAATTCTTGCTTCAGAAAGACACAAAATCACTGTGGAGTCCACACTTCTATTTGCTTCTACCACTACAAAAAGGGGATGATGAATCTAAAGGATCTTTGGAAATAAATTGGTCTGGAATAAGTTCTTGTGCTCCTGCAGTTGAATTTTTAAGGAACAAGTTTTCACTGGTTGCTGGAGATTATGATGGGGGCAGTAAAATTGTGTCACCTTGTGATGCTAATTCATCAAAGGTGGCCTGTGAAGGCACAGATAAAATTCACTTTGCCAATTGTGTAGTTGATGCTAACAGTATAAAGAATCGGGTAGTTTTGGCTATTCACACTGGAAGAATGTATTGTATTCTTGAAGCAGATAACAAGCTATGCGCTGAAAGTCCGTTTGATGGAAACGATGAGAAGTCTCCAGAGAACCACATGACCTTCGCAGAATACTTCAAGAAAAGCTATGGGATTGCTATGAAACATCCAGGACAACCTTTATTACGTTTGAAGCAAAGTCATAATGCACACAATGTTCTTTTGAATTTCTATGAGGAAGATGAGAAGGATAAGTCATCGCAAATTGGCCCAGCAAACACCAAAATGCCTGCGCATGTTCACATTCCACCTGAGCTTTTATTTATTCTTGATGTTAAAAGACATGTTTTAAAGTCAATGTACTTGCTACCATCATTGATGCATCGTCTTGAATCTCTCACGTTGTCCAGTCAGCTTAGACGAGAGATAGATGGTCAGAGTAGCAATATCAGCATACCTAGCTCTCTGATTCTAGAAGCACTGACAACCTTAAGATGCTGTGAAAATTTTTCAATGGAACGTCTTGAGTTGCTAGGAGATTCTGTTCTTAAGTTTGTAGTGAGCTGTCATCTCTTTCTTAAATATCCTAAGGAACATGAAGGAAAATTATCTGATAGACGGAAGTGGGCTGTTTGTAATTCAACTCTGCATAAACTGGGAATAAATCGCAAATTACAGGGCTATATCCAAGATTCTGCATTTGAACCACGCCGTTGGGTTGCTCCAGGACAGCGTTCTATACATGTTGTTTCTTGTGAATGTGGGGTGGAAACCCCAGAAGTTCCTGTGGATGGAAAATTCCAGACTGAAGATCCAAAAGTTGTGGTCGGAAAGCTTTGTGACCAGGGTCACCGCTGGATGTGTTCAAAGACAATTTCTGATTGTGTTGAAGCTCTTATAGGAGCATACTATGTAGTTGGCGGATTGATTGCTGCACTACATGTCATGAAGTGGCTTGGCATTGATTCTGAGCTAGAACCGTCCTTGGTTGAGGAAGCCATTGCTGCTGCATCTCTCCATACATATGCACCAAAACAAGACGAGATTGCAACCCTTGAAATGAAAATTGGGTATAAATTTTCTGTTAAGGGACTCTTACTGGAGGCAATGACACATTTATCTGAGGCTGAACTTGGGATTGGTTGCTGCTACGAGAGGCTTGAATTTCTCGGCGACTCTGTATTGGATCTTCTTATTACATGGCATCTTTATCAGAGCCATAAAGATATTGATCCAGGAGAGCTGACTGACTTGCGTTCTGCTTCTGTCAATAATGACAATTTTGCTCAAGTTGCCGTTAGACGAAACCTTTACCCACACCTTCTGCTCAGCTCTGGAGATTTGGTGAGCCAGATATCAGAATATGTTAAGGTCATTTCTGAATCAGAGAGCAGTACCAGATCACTCCCAGGCATTAAAGCCCCCAAGGCACTTGGAGATCTAGTGGAAAGTATTGCTGGGGCTATACTAGTTGATACCAAGCTCAATCTTGATGAAGTGTGGAGAATTTTCAATCCTCTGTTGTCTCCCATTGTTACCCCTGATAAACTTGAATTGCCTCCGTTGCGTGAACTAATTGAATTATGTGGCTCTCTTGGATATTTTATCAAAGAAAATTGTAAAAGGAAGGGAACTACTGTGCATGCTGAGCTTAGTGTACAACTGGAAAACACACTCTTAGTTCGGAAGGGAAACGGAATGAATAAAAAAATAGCAAAAGGAGAAGCTGCATTTCACTTGTTGAAAGATCTCAAGAAGAAGGGAATTTCACATGGCAGTAGCGTGCCAAAGAGAAAAAGAGAGAATCCTGACTATCTATGCGATTCGTCTAATCCAGAAACCAATATTGGTATTTGCACTGCTCTAACAGATGGACATTCGTCAAAGACAGTAGCGAATAAGAGGGCGAAAGTGGATGAAACTAACACAGAAGAAATTGCATCTGCTGTTTCTTTGCCCCACAAAGACTCATCTCCTGAGGACTCTGATTCCATTCCAGTTATTGCATCTATCAATATGAAGAAAGGAGGACCCCGAACCACACTATATGAACTGTGCAAGAGATTACAGTGGCCATTGCCAGAATATGATTCAACAGAGTATAAAGATAGGTGA 4791 0.3997 MDSSNQNQPCPNRTFNHLYTKPCAEESESGSLPFETPQTMDPRGYQLEVFEVAKKRNTIAVLDTGAGKTLIAVLLMKNIGQAIRSSGSKKLIIFLAPTVHLVNQQYKNIRDLTDFQVQEYYGAKGVDAWDLSIWEKEISENEVLVMTPQLLLDALRKAFLKMESICLMIIDECHRATGNHPYAKVMKEFYHKADEKPKIFGMTASPVGKKGVSSSVDCEGQISELESILDSRRYTVEDRTEMEVYIPSAKESCRYYDQAQFPDLNLKPKIEDLWSKSGALLSELQSSTDGNSKDVENKLNTLHKRMSNELARAVKIWHENFSKVEGECEVYQKGFSQCKAFIDVVMQIVEESLHLDDNKIPELDLNFSKAVDLGYLSPKLLELIKLFQSFGHSCEVLCLVFVERIITAKVIERFIKKVPQISHFTVSYLTGNNTSAGSLTAKKQKETLDSFRSGKVNILFTTEVIEEGIHVPKCSCVIRFDLPNTCRSYVQSRGRSRQDDSQFIVMLERGNMDQRNKLFDIIRSERSVTEAAIYKEDHASNLRVITEVKSNIYYVESTGASVNLDSSVSLLNRYCEKLPCDEYPRAKPNFEFLPFEGAYRCKLTLPPNAAFQTIVGPLGKDVRLARNLVCLEACKKLHQMHALNDHLVPFTEKPPKAEHSVQNKESGTGSGAGTTRRKELHGTASIRALCGTIEDKLDGAKFYAYRFDFKCSIVGEIFSGFVLLIESKFDDDVGNIELDLYLIKKTVKASLSFCGQVYLNAEQMMYAKCFHEVFFNGLFGRLVHKSKSVKGEREFLLQKDTKSLWSPHFYLLLPLQKGDDESKGSLEINWSGISSCAPAVEFLRNKFSLVAGDYDGGSKIVSPCDANSSKVACEGTDKIHFANCVVDANSIKNRVVLAIHTGRMYCILEADNKLCAESPFDGNDEKSPENHMTFAEYFKKSYGIAMKHPGQPLLRLKQSHNAHNVLLNFYEEDEKDKSSQIGPANTKMPAHVHIPPELLFILDVKRHVLKSMYLLPSLMHRLESLTLSSQLRREIDGQSSNISIPSSLILEALTTLRCCENFSMERLELLGDSVLKFVVSCHLFLKYPKEHEGKLSDRRKWAVCNSTLHKLGINRKLQGYIQDSAFEPRRWVAPGQRSIHVVSCECGVETPEVPVDGKFQTEDPKVVVGKLCDQGHRWMCSKTISDCVEALIGAYYVVGGLIAALHVMKWLGIDSELEPSLVEEAIAAASLHTYAPKQDEIATLEMKIGYKFSVKGLLLEAMTHLSEAELGIGCCYERLEFLGDSVLDLLITWHLYQSHKDIDPGELTDLRSASVNNDNFAQVAVRRNLYPHLLLSSGDLVSQISEYVKVISESESSTRSLPGIKAPKALGDLVESIAGAILVDTKLNLDEVWRIFNPLLSPIVTPDKLELPPLRELIELCGSLGYFIKENCKRKGTTVHAELSVQLENTLLVRKGNGMNKKIAKGEAAFHLLKDLKKKGISHGSSVPKRKRENPDYLCDSSNPETNIGICTALTDGHSSKTVANKRAKVDETNTEEIASAVSLPHKDSSPEDSDSIPVIASINMKKGGPRTTLYELCKRLQWPLPEYDSTEYKDR* 1597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2314 1596 Gene3D paz domain 874 1001 - -
Amo10g2314 1596 SUPERFAMILY RNase III domain-like 1045 1216 IPR036389 GO:0004525|GO:0006396
Amo10g2314 1596 CDD RIBOc 1257 1407 IPR000999 GO:0004525|GO:0006396
Amo10g2314 1596 Pfam Helicase conserved C-terminal domain 398 496 IPR001650 -
Amo10g2314 1596 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1443 1478 IPR014720 -
Amo10g2314 1596 CDD SF2_C_dicer 375 507 - -
Amo10g2314 1596 CDD RIBOc 1047 1211 IPR000999 GO:0004525|GO:0006396
Amo10g2314 1596 SUPERFAMILY PAZ domain 888 1003 IPR036085 GO:0005515
Amo10g2314 1596 SMART PAZ_2_a_3 865 1027 IPR003100 GO:0005515
Amo10g2314 1596 Pfam PAZ domain 887 1023 IPR003100 GO:0005515
Amo10g2314 1596 Gene3D Ribonuclease III domain 1029 1211 IPR036389 GO:0004525|GO:0006396
Amo10g2314 1596 MobiDBLite consensus disorder prediction 1481 1498 - -
Amo10g2314 1596 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 567 657 IPR005034 GO:0016891
Amo10g2314 1596 SMART helicmild6 409 499 IPR001650 -
Amo10g2314 1596 PANTHER DICER-RELATED 26 1595 - -
Amo10g2314 1596 Gene3D Dicer dimerisation domain 562 659 IPR038248 -
Amo10g2314 1596 ProSitePatterns Ribonuclease III family signature. 1277 1285 IPR000999 GO:0004525|GO:0006396
Amo10g2314 1596 ProSiteProfiles Ribonuclease III family domain profile. 1241 1386 IPR000999 GO:0004525|GO:0006396
Amo10g2314 1596 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 379 537 IPR001650 -
Amo10g2314 1596 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 89 515 IPR027417 -
Amo10g2314 1596 ProSiteProfiles PAZ domain profile. 891 1003 IPR003100 GO:0005515
Amo10g2314 1596 MobiDBLite consensus disorder prediction 1481 1500 - -
Amo10g2314 1596 Pfam Ribonuclease III domain 1065 1199 IPR000999 GO:0004525|GO:0006396
Amo10g2314 1596 Pfam Ribonuclease III domain 1277 1385 IPR000999 GO:0004525|GO:0006396
Amo10g2314 1596 MobiDBLite consensus disorder prediction 654 676 - -
Amo10g2314 1596 ProSiteProfiles Ribonuclease III family domain profile. 1028 1200 IPR000999 GO:0004525|GO:0006396
Amo10g2314 1596 Gene3D Ribonuclease III domain 1237 1408 IPR036389 GO:0004525|GO:0006396
Amo10g2314 1596 SUPERFAMILY RNase III domain-like 1240 1406 IPR036389 GO:0004525|GO:0006396
Amo10g2314 1596 Gene3D - 36 274 IPR027417 -
Amo10g2314 1596 PANTHER ENDORIBONUCLEASE DICER HOMOLOG 3 26 1595 - -
Amo10g2314 1596 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 49 206 IPR014001 -
Amo10g2314 1596 SMART riboneu5 1047 1220 IPR000999 GO:0004525|GO:0006396
Amo10g2314 1596 SMART riboneu5 1256 1409 IPR000999 GO:0004525|GO:0006396
Amo10g2314 1596 SMART ultradead3 38 237 IPR014001 -
Amo10g2314 1596 Pfam Dicer dimerisation domain 567 653 - -
Amo10g2314 1596 CDD DEXHc_dicer 42 238 - -
Amo10g2314 1596 Pfam Type III restriction enzyme, res subunit 53 206 IPR006935 GO:0003677|GO:0005524|GO:0016787
Amo10g2314 1596 Gene3D - 373 532 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2314 Amo-Chr10 81008451 81018987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2314 423 496 Eukaryotic Initiation Factors Gene Family AT3G19760 37.838 4.47e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2314 K11592 - gmx:100806831 2197.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo10g2314 10 81008451 81018987 Amo20g2761 20 126221385 126232886 hybridization