Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2313 ATGGGTAGTGGTAATGGTAGAGTTGATGTTGTGAGTGGCAAGGGATGCTCAAGGCTGTTTTCATCTTCGTTCAGAGCTTTGCAGCCATTGGAGCCAATGTCTTCTGTTTCGTCCTCCCCACATATTCGATCAAATGCTCCTTTTGCTGGTCTTGTTATATGCGTTACTGGGCTATCCAAAGAAGCAAGGAATCAAGTCATGGAGGCAACAGAAAGATTAGGTGGCCAGTATAGCCCCAATTTGCATCCACAGTGTACCCATTTGGTGGTTCAGAGCTTTGGAGGACGCAAGTTTGAGCATGCGCTGAAGCATGGAGCAAAAAACGGTCTCTTTGTTGTCACACTGGGTTGGTTCGTGGACAGTGTCAGGAAAAATGTGAGGTTGAGTGAGTCCCATTACAGTGTGAAGAGTAATGTGGACAATAACACACGCTTGGATGACTTTAAACTGCTTCCTGGGTATACCGGTGCCGAAAATTCTTGTCTTCCAGCAAGTCTACGTGAGACCAAGAACGTTGATAATGTTGAAGAATTTCAAAGATCTTCTGGTAGAAAATCTAATAGAAGTGTGGACTTCACTTTATCTGGTTACTCCATCTATATTGATCCTGGAATTTCATGTGAATTGAGGAACAAGGTTGTTGATACTGCCACGAGAGAAGGTGCTAGTCTGGCGGAACGATGGTTTGTTGGCTGCAATGTTAGTCATGTAGTGACTGAAGGGACATTTGTACAAAGATATCTTGGATATTCAAGTAACCTCATCACACCACTGTGGATTCTCAAAACAGCCAAGGAGAAATATGCACAAAGGCTTGTTCATATGTCTGCTGATTTGGCAAAGCAAGTTGGATTGATGCTTGAAGACATTCATAATGGCATTTTAAGGGAGGAAATAAAGAAGCAAAAAGACAATGAAGTTCATCAGGGCAGTGAAAGTGAATATAGTTACCACGAGAGGCAACAAATAGTGAATGCTGCAAAAATTGGTGTAAGAAGTCGCCGTGGTAGGCAAATGCAGACTTGTCAGACTCCAATTCGTCCTATAACTCCTAACAACCTTCTAGACTCTATCAGCTGGTCTATATCCGAGCCAACTTCAGCTGCTTCCATCTACACAGATTCTTTCAGTGTTGAAGATCATACTGAAAATCATAATACTTCAATATTTCTTGGTGCAAAAGGGGATGGCAAGGACTCAGAAGCTTCATTTTCAAACTCCACTCGTCATCTGACCGAAAGCGAGAAATCAGAGTTGATATTTAAAAACCATTTTCTCACCATACTGTTCCCAATCGACCGATTTGCCGAGATGGGTCCTTCTTCACAAACTTTCTTCAGCCATAATGGTTTTACATGTCTTCAGGTGTTGGATCATATCCATGCATTTTATCAGGAGAATATGTCAAACCAAGAAATAGAAGCTGCAATTCATACCGATTCACGACATGCTGATAGGCTTAGATCAGTGTACCGCAGTAAAGAAACTGCAGAGCGTGGCTTTGTGTTGTTCAAACGCATTGAATTTTTGGGAAGTCGCACTAGTTTTGAAATGTTGAAGCGTGTAACTGGGGACAACAACTCCAATGTGTATGAGCTATTACTTAGGGCTTAA 1614 0.4207 MGSGNGRVDVVSGKGCSRLFSSSFRALQPLEPMSSVSSSPHIRSNAPFAGLVICVTGLSKEARNQVMEATERLGGQYSPNLHPQCTHLVVQSFGGRKFEHALKHGAKNGLFVVTLGWFVDSVRKNVRLSESHYSVKSNVDNNTRLDDFKLLPGYTGAENSCLPASLRETKNVDNVEEFQRSSGRKSNRSVDFTLSGYSIYIDPGISCELRNKVVDTATREGASLAERWFVGCNVSHVVTEGTFVQRYLGYSSNLITPLWILKTAKEKYAQRLVHMSADLAKQVGLMLEDIHNGILREEIKKQKDNEVHQGSESEYSYHERQQIVNAAKIGVRSRRGRQMQTCQTPIRPITPNNLLDSISWSISEPTSAASIYTDSFSVEDHTENHNTSIFLGAKGDGKDSEASFSNSTRHLTESEKSELIFKNHFLTILFPIDRFAEMGPSSQTFFSHNGFTCLQVLDHIHAFYQENMSNQEIEAAIHTDSRHADRLRSVYRSKETAERGFVLFKRIEFLGSRTSFEMLKRVTGDNNSNVYELLLRA* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2313 537 CDD BRCT_TopBP1_rpt2_like 47 125 - -
Amo10g2313 537 Gene3D BRCT domain 46 137 IPR036420 -
Amo10g2313 537 ProSiteProfiles BRCT domain profile. 43 135 IPR001357 -
Amo10g2313 537 SMART BRCT_7 45 125 IPR001357 -
Amo10g2313 537 SMART BRCT_7 191 267 IPR001357 -
Amo10g2313 537 Pfam Family of unknown function (DUF6699) 446 521 IPR046522 -
Amo10g2313 537 PANTHER BRCT DOMAIN DNA REPAIR PROTEIN-RELATED 3 537 - -
Amo10g2313 537 Pfam twin BRCT domain 51 117 IPR001357 -
Amo10g2313 537 SUPERFAMILY BRCT domain 33 136 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2313 Amo-Chr10 81003473 81008304 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2313 47 139 Core DNA Replication Machinery Family AT1G77320 36.559 4.61e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2313 - - gmx:100815253 869.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo10g2313 10 81003473 81008304 Amo20g2760 20 126216519 126221685 hybridization