Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2307 ATGGTTTCTGTGCTAGTGTTAAAGGTCACACTTTTCAAGAACCCAGTTGCAGATTTGTCTTTGTTTCAGTTGAAGATGGGTATTTGCAATCAGGATGCAATCAAGCAGTTGCAATCCATGATGGAAAATGTGAATGAGCAGCAGAAGATCACATTCCAGGATGCATGGCAGTGCGACATATGTGGTTCTAAATCTGAAAGGGGATTTGAGGCAACTTTTGAAGTGCTCCCTAGACTTAATGACATCAAATTTGGTAGTGGAGTAATTGATGAACTTCTCTTTTTGGAGTTGCCACGCGAACAAAGATTTCCTTGTGTTAAAATTTTTGGAAAGCAATGA 339 0.3953 MVSVLVLKVTLFKNPVADLSLFQLKMGICNQDAIKQLQSMMENVNEQQKITFQDAWQCDICGSKSERGFEATFEVLPRLNDIKFGSGVIDELLFLELPREQRFPCVKIFGKQ* 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2307 112 Pfam LIM-domain binding protein 50 105 IPR029005 -
Amo10g2307 112 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 53 105 - -
Amo10g2307 112 Coils Coil 30 50 - -
Amo10g2307 112 PANTHER LIM DOMAIN-BINDING PROTEIN 53 105 IPR029005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2307 Amo-Chr10 80740588 80745612 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2307 53 102 C2H2 Transcription Factor Family AT1G43850 58.000 7.94e-16 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2307 - - sind:105179258 103.99