Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2303 ATGAAGAATTCGAAGCAGCTTGCTAACATGGCTGGGGATGAAGGTGGTGATGCACCTAATAATAATCATAATCACACTTCATTATCTAATAATTGTGATGATGATAACAACAATAACAAGAAGGTGTACAAAGGGGTGAGGAAGAGAAAGTGGGGGAAATGGGTATCTGAAATTAGGCTTCCAAATAGCCGCGAACGCATTTGGCTTGGCTCTTATGATTCTCCTGAAAAAGCTGCGCGTGCATTCGATGCTGCCCTTTATTGTCTCCGAGGTTGTCGAGCCAATTTCAATTTCCCCGACACTCCTTTCAACTTGAGCACCAGCGCCGTTCATCATCATTCGCTTACTCATCAAGAAATTCAAGAGATTGCTGCTAGCTTTGCCCATTCTCAGGACCCACATCATGATGATCACCAACAAGAACAACCAAATAGCAATGACAATGATTCTTCATCAGTTGGATTGTTAGAATCCAAAGCTGATGCTGCTGTTGTATCTCAAGAGCAAGTGGACAACAACATGATGATGGATTGGACATTTTTGAAGGATTTGGGTGGTTCTTGTTCTGCTGATTGTGGGGGTGCTCTCTATTCTGATGATGAGTTGGACAGAATTGATCATCACTACTCGGGTGATGAATTGTTGTTCTCGGTACCAACTTTTCAGGATAATGTGGCTGATGATGACCCTTTTTTTAACCAATCATTCCTTTGGAATTGGAGCTTCTAA 729 0.4211 MKNSKQLANMAGDEGGDAPNNNHNHTSLSNNCDDDNNNNKKVYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSPEKAARAFDAALYCLRGCRANFNFPDTPFNLSTSAVHHHSLTHQEIQEIAASFAHSQDPHHDDHQQEQPNSNDNDSSSVGLLESKADAAVVSQEQVDNNMMMDWTFLKDLGGSCSADCGGALYSDDELDRIDHHYSGDELLFSVPTFQDNVADDDPFFNQSFLWNWSF* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2303 242 MobiDBLite consensus disorder prediction 129 143 - -
Amo10g2303 242 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 27 242 - -
Amo10g2303 242 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF018 27 242 - -
Amo10g2303 242 Pfam AP2 domain 42 91 IPR001471 GO:0003700|GO:0006355
Amo10g2303 242 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Amo10g2303 242 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Amo10g2303 242 Gene3D AP2/ERF domain 42 100 IPR036955 GO:0003700|GO:0006355
Amo10g2303 242 MobiDBLite consensus disorder prediction 128 153 - -
Amo10g2303 242 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Amo10g2303 242 MobiDBLite consensus disorder prediction 1 44 - -
Amo10g2303 242 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Amo10g2303 242 CDD AP2 43 101 IPR001471 GO:0003700|GO:0006355
Amo10g2303 242 MobiDBLite consensus disorder prediction 19 36 - -
Amo10g2303 242 SUPERFAMILY DNA-binding domain 42 100 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2303 Amo-Chr10 80693678 80694610 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2303 43 240 AP2-EREBP Transcription Factor Family AT1G19210 44.500 2.52e-42 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo10g2303 AP2 2.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2303 - - aip:107622034 430.639