Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2302 ATGGTGTGTGAGAAGGAGAGGGAGTGCATTGAGGACATGGAAATTGAAATCCTGCCTTCAATGTGGCCTGAAGATATTGGAAGTGAAGTTGGAAAGCAGTTCAATATCGAAAAGCCTGGAAGGGAGCAGGATATGTTAGAGGATGTTACAATCATAGAGGAGCCAACTATAGCCGATTTCAAGCGCCTCATGGAGCTTACAAATTTCACTGAAAAAGGGTCTTCTCAGTTGGCATACCTCATGAAACATTGGGAGTACAAGCAGGCAAATGCGGTGCGCCTTCTGAGGGAAGAGCTCGACAACCTTAGCAAACAAAGGCAGGATGTTGAGCTAAGGAAGCTGGAGATATTGGAGGAGCACCGGTTCGAGGAAGAAAGATATGGAGGCGACAAAAGGCCGGTGTCTATATTGGAGGATGTTTATGACATATGGCAGGACATGCCGCGAAGGAAGAACAAGGTTGTGCTTCAGAACAAGAGAATTGAAATAGATGCTGCTGAGTATGATACTGTTAAGTATTGGAAACAAAGGGCCTTGCGTTTGGAGAAATTGCTTGAGGCAAGCATCCAGAGAGAGCAGATACTCCAAGACAAGTTGCTTGAAAGGATCAACAACATTGAGAGGCAATCCTCACCTGTAGAAGAACTCTCCCAGATTCTCAAAAGAGCAGATAATTTCTTGCATTTCATCCTCCAGAATGCACCTGTTGTTATTGGCCATCAGGACAAGGAATTGCGATACCGGTTCATCTATAATCATTTTCCAAGTTTGCAAGAGGAGGACATAATAGGAAAAACAGATGTTGAAATATTCACAGGATCTGGGGTCAAAGAATCTCAAGAGTTCAAGAGAGAAGTCTTGGAGAAAGGATTACCTGCAAAAAGGGAAATCACTTTTGAGACAGAACTATTCGGATCAAAGACATTCTTGATATATGTAGAACCCGTGTTTAGCAAAGTAGGGGAGACAATTGGAATAAACTATATGGGAATGGATGTAACAGATCAGGTGCGGAAAAGAGAAAGGATGGCTAAGATTCGGGAAGAGATTGCAGTTCAGAAAGCAAAGGAAACAGAACTAAACAAAACCATTCACATTACAGAGGAGACTATGAGAGCAAAACAAATGCTGGCCACAATGTCTCATGAGATAAGGTCTCCATTATCTGGGGTAGTTAGCATGGCTGAAGTTCTTTCTACCACAAAGCTTGATGGGGAGCAAAGACAGCTCTTGGATGTTATGCTATCTTCAGGAGATTTGGTTCTTCAACTTATAAATGACATTCTTGATCTTTCCAAGGTTGAATCAGGAGTTATGAAGCTCGAGGCAACTAAATTCAGGCCACGAGAGGTAGTAAAGCACGTACTCCAGACGGCTGCAGCGTCGTTGCAGAAAATATTAACCTTAGAAGGACATGTGTCAGATGATGTACCAATTGAGGTTATTGGTGATGTTTTAAGGATCCGGCAAATTCTTACAAATTTGATCAGCAATGCGATCAAGTTTACACATGAAGGGAAAGTAGGTATAAACCTATATGTTGTTTCAAATATTTCAGCAACTCAAGCAAATGAAGATAGATACCTCTCAACACCTCAAAGTAGCAGTGACCGAAATCTTCTTGATGATCAGAGACATGATCACCCTCAAGGCCAAAACCATGCATTTCATGGTGAATGCGGATCATCAATTAAAAATGAATGCTCAGTAAATGAAGACACTGAGGAGCATCATCATTTAACAGAGACAACGGTGTGGATACGCTGTGATGTGTATGACACAGGCATTGGAATACCAGAAAATGCAATACCTACTTTATTTAAAAGGTACATGCAAGTTGGCACAGATCATGCTCGAAAGTATGGTGGCACAGGACTAGGATTAGCAATATGCAAACAACTGGTTGAGTTGATGGGGGGTCATCTAACAGTGTCTAGCAAAGAACACCATGGTTCTACCTTCACATTCATACTTCCCTACAAGGTTTCAATAATTGAAGAAAATTCTGATGACACAGATGAACTATCTGATATGGAGAATGATGAAGGTGCTTGTGATTATACAACAGAAAGTTTCTTCCAATTCCAACCGCGAACTTTAGGCTCTCTTTTCTCTTCCAATGGTTCTAGCAGAGCACACAAGTTATTAACACATAAGATTGGCTACACAAGCTCACATACTTCAGAGTGTTCATTCTCATTTCCATTCCCATTTCATGATATCATATCAAAAGGGACATGTTCTGTTCAGGATTCATCTTTAGTTGTTGATGCTCCAGAGATATCAGAATCATCAGCAAGTTCATCCGGTCAGAGCCGAGAAACAAACATCGAAAATATAGTTAGCAGTGATAAATATTGTCAAGATAAGGGTATTACAGATTCTTCTAAACATATGGTGGAAGGTTCAGAAATGGATATAGCAACAAAGCCAAGTGAACTTCAGAAAACATGTAAGGTTCAAGGGAATGCAAACGTGACAACTCAATGTGTTACTAGCATCTGTGCATCAGAATTAACCAGATCCACATCAAAGCCTAAGATCCTTCTGGTTGAAGATAGCAAGATTAATGTCATGGTGACACAATCCATGATGAAGCAGTTAGGCCATAGCATAGATGTTGTGAATAATGGAGCCGAAGCAGTGCGTGCCGTTCAGCGCTGCTCTTATGACTTGGTTTTGATGGATGTTTGCATGCCAATAATGAATGGCCTTCAGGCAACGAAATTGATCCGGTCTTTCGAGGAAACAGGAAACTGGGATGCTGCAAGAAAAGTTTTAATGGAGTTAAATCTACCAGATCTAGATCATGAATGTTCTGGACCATCTAAAAAGCGAATCCCAATTGTCGCGGTGAGAAATTAA 2865 0.4105 MVCEKERECIEDMEIEILPSMWPEDIGSEVGKQFNIEKPGREQDMLEDVTIIEEPTIADFKRLMELTNFTEKGSSQLAYLMKHWEYKQANAVRLLREELDNLSKQRQDVELRKLEILEEHRFEEERYGGDKRPVSILEDVYDIWQDMPRRKNKVVLQNKRIEIDAAEYDTVKYWKQRALRLEKLLEASIQREQILQDKLLERINNIERQSSPVEELSQILKRADNFLHFILQNAPVVIGHQDKELRYRFIYNHFPSLQEEDIIGKTDVEIFTGSGVKESQEFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKVGETIGINYMGMDVTDQVRKRERMAKIREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEVLSTTKLDGEQRQLLDVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLQKILTLEGHVSDDVPIEVIGDVLRIRQILTNLISNAIKFTHEGKVGINLYVVSNISATQANEDRYLSTPQSSSDRNLLDDQRHDHPQGQNHAFHGECGSSIKNECSVNEDTEEHHHLTETTVWIRCDVYDTGIGIPENAIPTLFKRYMQVGTDHARKYGGTGLGLAICKQLVELMGGHLTVSSKEHHGSTFTFILPYKVSIIEENSDDTDELSDMENDEGACDYTTESFFQFQPRTLGSLFSSNGSSRAHKLLTHKIGYTSSHTSECSFSFPFPFHDIISKGTCSVQDSSLVVDAPEISESSASSSGQSRETNIENIVSSDKYCQDKGITDSSKHMVEGSEMDIATKPSELQKTCKVQGNANVTTQCVTSICASELTRSTSKPKILLVEDSKINVMVTQSMMKQLGHSIDVVNNGAEAVRAVQRCSYDLVLMDVCMPIMNGLQATKLIRSFEETGNWDAARKVLMELNLPDLDHECSGPSKKRIPIVAVRN* 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2302 954 Gene3D - 840 954 - -
Amo10g2302 954 SMART HKATPase_4 483 662 IPR003594 -
Amo10g2302 954 Coils Coil 92 119 - -
Amo10g2302 954 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 6 952 - -
Amo10g2302 954 Pfam Response regulator receiver domain 848 915 IPR001789 GO:0000160
Amo10g2302 954 Pfam His Kinase A (phospho-acceptor) domain 374 437 IPR003661 GO:0000155|GO:0007165
Amo10g2302 954 ProSiteProfiles Response regulatory domain profile. 847 954 IPR001789 GO:0000160
Amo10g2302 954 CDD HisKA 374 433 IPR003661 GO:0000155|GO:0007165
Amo10g2302 954 Gene3D PAS domain 207 336 - -
Amo10g2302 954 SUPERFAMILY CheY-like 844 916 IPR011006 -
Amo10g2302 954 MobiDBLite consensus disorder prediction 539 553 - -
Amo10g2302 954 CDD HATPase_EvgS-ArcB-TorS-like 488 659 - -
Amo10g2302 954 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 483 660 IPR003594 -
Amo10g2302 954 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 371 437 IPR036097 GO:0000155|GO:0007165
Amo10g2302 954 SMART HisKA_10 372 437 IPR003661 GO:0000155|GO:0007165
Amo10g2302 954 MobiDBLite consensus disorder prediction 526 555 - -
Amo10g2302 954 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 6 952 - -
Amo10g2302 954 PRINTS Bacterial sensor protein C-terminal signature 622 640 IPR004358 GO:0016310|GO:0016772
Amo10g2302 954 PRINTS Bacterial sensor protein C-terminal signature 587 601 IPR004358 GO:0016310|GO:0016772
Amo10g2302 954 PRINTS Bacterial sensor protein C-terminal signature 646 659 IPR004358 GO:0016310|GO:0016772
Amo10g2302 954 Gene3D - 337 435 - -
Amo10g2302 954 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 426 660 IPR036890 -
Amo10g2302 954 SMART REC_2 846 939 IPR001789 GO:0000160
Amo10g2302 954 CDD REC_hyHK_CKI1_RcsC-like 848 952 - -
Amo10g2302 954 Coils Coil 189 209 - -
Amo10g2302 954 ProSiteProfiles Histidine kinase domain profile. 379 662 IPR005467 -
Amo10g2302 954 Gene3D - 436 665 IPR036890 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2302 Amo-Chr10 80607521 80611547 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2302 1 952 Histidine Kinase Gene Family AT5G10720 55.934 0.0 1026
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Amo10g2302 HATPase_c 3e-28 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2302 - - gmx:100819520 1440.63