Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2287 ATGGGGTATCTCAATTCAGGTGTGTCCTCTTCAAGCCAAGTTCATGCTGCAGATGATGCACCTGCCAGTGGAGGTGGTCTCAGTCATAATGGCAAATTCAGTTATGGATATGCTAGCTGCGCCGGAAAGAGGTCTTCAATGGAAGACTTTTATGAAACAAGAGTTGATGGTGTGGATGGTGAAATCGTTGGCCTTTTCGGAGTTTTTGATGGTCATGGTGGTGTTCGTGCTGCTGAGTATGTCAAGAAAAACCTGTTTAGTAATTTGATCAGTCATCCAAAATTCATATCCGACACTAAATCTGCGATAGCTGATGCGTACAACCATACCGACTCAGAATTTCTGAAATCCGAAAATACTCATAACAGAGATGCTGGCTCAACTGCTTCTACTGCAATTCTAGTTGGTGACCGTTTGCTTGTTGCAAATGTTGGGGACTCCAGAGCTGTTATATGCAGGGGTGGTAATGCCATTGCTGTTTCTCGAGATCACAAGCCAGACCAAACTGATGAGAGACAAAGGATTGAAGATGCAGGGGGCTTTGTTATGTGGGCTGGAACTTGGAGAGTTGGTGGTGTTCTCGCCGTTTCTCGTGCATTTGGAGATAGGCTCCTGAAGCAGTATGTTGTTGCTGATCCAGAAATCAAGGAAGAAAAGGTCGACAGCTCGCTCGAGTTTCTTATATTGGCAAGTGATGGCCTATGGGATGTTGTCTCAAATGAGGAAGCTGTGGCTATGGTGAAACCAATAGAGGATGCAGAGGAGGCAGCAAAGAAATTGTTGAAAGAAGCAATTCAGAGAGGAAGTGCTGACAATATCACTTGTGTTGTTGTTCGTTTCTTGATGGACCAAGGTGGTGCTTCTGCCTCTTCTAATGATACCACCACCTCTGCCAATTCTGTTACCCCGTCTCTCAATGCTAGGAGGTCAGCAACATTTGTGATTGGTAGTCATCAACTAACCATCAATGATGATTTGATGGTGTGA 987 0.4478 MGYLNSGVSSSSQVHAADDAPASGGGLSHNGKFSYGYASCAGKRSSMEDFYETRVDGVDGEIVGLFGVFDGHGGVRAAEYVKKNLFSNLISHPKFISDTKSAIADAYNHTDSEFLKSENTHNRDAGSTASTAILVGDRLLVANVGDSRAVICRGGNAIAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIKEEKVDSSLEFLILASDGLWDVVSNEEAVAMVKPIEDAEEAAKKLLKEAIQRGSADNITCVVVRFLMDQGGASASSNDTTTSANSVTPSLNARRSATFVIGSHQLTINDDLMV* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2287 328 MobiDBLite consensus disorder prediction 1 25 - -
Amo10g2287 328 Pfam Protein phosphatase 2C 61 273 IPR001932 -
Amo10g2287 328 Gene3D - 26 284 IPR036457 -
Amo10g2287 328 PANTHER ALPHABET, ISOFORM E-RELATED 3 305 - -
Amo10g2287 328 CDD PP2Cc 33 280 IPR001932 -
Amo10g2287 328 ProSitePatterns PPM-type phosphatase domain signature. 65 73 IPR000222 GO:0043169
Amo10g2287 328 SUPERFAMILY PP2C-like 29 280 IPR036457 -
Amo10g2287 328 MobiDBLite consensus disorder prediction 1 17 - -
Amo10g2287 328 PANTHER PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE TYPE 2C 3 305 - -
Amo10g2287 328 SMART PP2C_SIG_2 29 280 IPR001932 -
Amo10g2287 328 ProSiteProfiles PPM-type phosphatase domain profile. 34 280 IPR001932 -
Amo10g2287 328 SMART PP2C_4 24 278 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2287 Amo-Chr10 80046823 80050440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2287 1 303 PP2C-type Phosphatase Gene Family AT4G31750 84.488 0.0 524
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2287 K17506 - gmx:100797070 514.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo10g2287 10 80046823 80050440 Amo20g2724 20 125215653 125219405 hybridization