Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2279 ATGGCCATGGGGGATTCAAGGGTTGACACAATTGCACGCTTAGCTCAATGGAAAATCGATAACTTCGGACCTTGTTCCTACAAGAAATCTGACCCTTTCAAGGTCGGAATCTGGAATTGGTACTTATCCATAGAGAGAAACAGGTACCTCTACATACACCTGTTTCCAGAACCTTCTCGTGTCTCCAAGGAGCAGCCACCCGTTGCTCGTTTCATTCTTCGTGTTTCCAATGCTGGCTCTTCCCGCAGGTTCTATATTTCCCCTGTCCATGAAAGGATACTTAGGACATATGATGACTTTGTCTGGCCTGTTGATACTTCATTTGTTGGTCGCTTCATTATTGATGTTGAATTTCTTGACTTGAAGATATGCCCTCTGAATGGTGGGGAAGCTAGTTCTATATGGCCATCCGAGGGAAAATTGCAATCCATTGCATCTCAAAGTACTCTTAGTTGCCTCTCACGCATGCTTGAYGATGCTATTCATGCTGACCTAACCATTATTACAGCTGATGGTACATTGAGAGCTCACAAGGCAATCTTGTCTGCAAGTTCGCCGGTGTTCCAGAGTATGTTTCATCACAACCTGAGGGAGAAAGAGTCATCTACTATCCATATAGAAGACATGTCGCTAGAATCTTGCACGGCTCTTCTAAGATACTTGTATGGAACAATCAAGCAAGACGATTTCTGGAAACACCGGCTTGCATTGCTTGGAGCAGCCAATAAATAYGACATCACCGGTCTCAAAGACGTGTGCGAAGACAGTCTGCTGGAAGATCTTAACTCCGGAAATGTTCTCGARAGGCTCAACGAAGCTTGGCTTTATCAATTACACAAGTTAAAGAAAGGATGCTTGACCTTCTTATTTGACTTCGGAAAGATATATGATGTTAGAGATGAAGTAAACAACTTTTTTCAGCATGCTGATAGGGAGCTAATGATGGAGATGTTTCAGGAAGTGCTCACAGTTTGGAGACCGGTATAA 987 0.4326 MAMGDSRVDTIARLAQWKIDNFGPCSYKKSDPFKVGIWNWYLSIERNRYLYIHLFPEPSRVSKEQPPVARFILRVSNAGSSRRFYISPVHERILRTYDDFVWPVDTSFVGRFIIDVEFLDLKICPLNGGEASSIWPSEGKLQSIASQSTLSCLSRMLDDAIHADLTIITADGTLRAHKAILSASSPVFQSMFHHNLREKESSTIHIEDMSLESCTALLRYLYGTIKQDDFWKHRLALLGAANKYDITGLKDVCEDSLLEDLNSGNVLERLNEAWLYQLHKLKKGCLTFLFDFGKIYDVRDEVNNFFQHADRELMMEMFQEVLTVWRPV* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2279 328 PANTHER OS08G0495500 PROTEIN-RELATED 4 328 IPR044714 -
Amo10g2279 328 ProSiteProfiles BTB domain profile. 163 222 IPR000210 GO:0005515
Amo10g2279 328 PANTHER BTB/POZ DOMAIN PLANT PROTEIN 4 328 - -
Amo10g2279 328 SMART BTB_4 163 261 IPR000210 GO:0005515
Amo10g2279 328 CDD MATH 17 103 IPR002083 GO:0005515
Amo10g2279 328 Pfam BTB/POZ domain 157 259 IPR000210 GO:0005515
Amo10g2279 328 CDD BTB_POZ_ZBTB_KLHL-like 162 244 - -
Amo10g2279 328 SUPERFAMILY POZ domain 146 259 IPR011333 -
Amo10g2279 328 Gene3D Potassium Channel Kv1.1; Chain A 137 290 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2279 Amo-Chr10 79897744 79900479 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Amo10g2279 BTB 2.4e-22 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2279 K10523 - rcu:8278000 573.933