Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2267 ATGGGAATATATCTAAGCACACCCAAAACTGAAAAGTTTTCTGAAGATGGTGAAAATGACCGTCTTAGATATGGTTTATCATCCATGCAAGGCTGGCGTGCAACAATGGAAGATGCTCATGCTGCATATACTGATCTGGATGATTCTACTTCGTTTTTTGGTGTCTACGATGGGCATGGAGGTAAGGTGGTTGCAAAGTTTTGTGCAAAGTTTCTTCACCAACAGGTGCTCAGAAGTAAAGAATATGCAGATGGAGATATAGGAACCTCTCTTCAGAAAGCATTTCTAAGAATGGATGACATGATGCGTGGCCAAAGGGGATGGAGGGAATTATCAGTCTTGGGGGATAAGATAAACAAGTTTACTGGAATGATAGAAGGGTTGATTTGGTCTCCAAAAGGTACCGATGGTGGTGACCAAGTTGATGATTGGGCTTTTGAGGAGGGACCTCATGCTGATTTTGCTGGCCCAACTTCTGGAAGCACTGCCTGTGTTGCTGTTATTAGAAACAACCAACTTTTTGTTGCAAATGCTGGTGATTCGCGTTGTGTAATTTCTCGAAAGGGTCAGGCATACAATTTGTCTAGAGACCACAAACCTGAGCTTGAGATTGAAAAGGAAAGAATCTTAAAAGCTGGTGGTTTTATTCACGCAGGACGAGTTAATGGAAGTTTAAATCTTGCAAGAGCTATTGGTGACATGGAATTTAAACAGAATAAATTTCTTCCCGCTGAAAAACAAATTGTAACTGCCAATCCAGATATAAACACTGTCGACCTTTGTGAAGAAGATGAATTCATGGTCCTAGCTTGTGATGGCATATGGGATTGCATGTCAAGCCAACAGTTGGTAGATTTTATTCATGAACAATTGCGCTCTGAAACCAAGCTTTCTGTAGTGTGTGAAAGAGTACTCGATCGGTGTTTGGCTCCATCAACCGCCGGTGGCGAGGGATGCGACAACATGACGATGATCTTGGTGCAGTTCAAGAAGCCAGCTCAATCCAGTGCACCACCAGAAGAGCAGCAATCCTCTGCAAACGAAAAAGCTGAAGAAGCTCATGAACCAAAAGCGGATAGTAGTGAAAGTTAG 1092 0.4258 MGIYLSTPKTEKFSEDGENDRLRYGLSSMQGWRATMEDAHAAYTDLDDSTSFFGVYDGHGGKVVAKFCAKFLHQQVLRSKEYADGDIGTSLQKAFLRMDDMMRGQRGWRELSVLGDKINKFTGMIEGLIWSPKGTDGGDQVDDWAFEEGPHADFAGPTSGSTACVAVIRNNQLFVANAGDSRCVISRKGQAYNLSRDHKPELEIEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLPAEKQIVTANPDINTVDLCEEDEFMVLACDGIWDCMSSQQLVDFIHEQLRSETKLSVVCERVLDRCLAPSTAGGEGCDNMTMILVQFKKPAQSSAPPEEQQSSANEKAEEAHEPKADSSES* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2267 363 Gene3D - 1 330 IPR036457 -
Amo10g2267 363 SUPERFAMILY PP2C-like 3 331 IPR036457 -
Amo10g2267 363 PANTHER PROTEIN PHOSPHATASE 2C 60 ISOFORM X1-RELATED 1 342 - -
Amo10g2267 363 ProSitePatterns PPM-type phosphatase domain signature. 52 60 IPR000222 GO:0043169
Amo10g2267 363 CDD PP2Cc 23 329 IPR001932 -
Amo10g2267 363 MobiDBLite consensus disorder prediction 330 363 - -
Amo10g2267 363 Pfam Protein phosphatase 2C 156 313 IPR001932 -
Amo10g2267 363 Pfam Protein phosphatase 2C 23 103 IPR001932 -
Amo10g2267 363 SMART PP2C_SIG_2 28 329 IPR001932 -
Amo10g2267 363 PANTHER PROTEIN PHOSPHATASE 2C 1 342 IPR015655 GO:0004722|GO:0006470
Amo10g2267 363 MobiDBLite consensus disorder prediction 345 363 - -
Amo10g2267 363 ProSiteProfiles PPM-type phosphatase domain profile. 23 329 IPR001932 -
Amo10g2267 363 SMART PP2C_4 13 327 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2267 Amo-Chr10 79535215 79539920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2267 1 343 PP2C-type Phosphatase Gene Family AT2G25070 77.843 0.0 591
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2267 K17499 - gmx:100787778 631.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo10g2267 10 79535215 79539920 Amo18g3466 18 137778863 137783249 hybridization
Amo16g3764 16 149044534 149049629 Amo10g2267 10 79535215 79539920 PCT
Amo10g2267 10 79535215 79539920 Amo16g3764 16 149044534 149049629 PCT