Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2238 ATGGAGGAGTGCCAGTGCCACACGGTGTTTGGCAAGTATGAAATGGGGAGGCTTCTCGGGAAAGGCACGTTTGCCAAGGTGTACTACGGGAAGCAAATAGCCACGGGTGAAAGTGTGGCGATTAAGGTGATCAACAAGGAGCAGGTGAAGAGAGAAGGCATGATGGAACAGATCAAGCGCGAGATTTCGGTGATGGGCCTCGTCAAGCACCCGAATATCGTGGAGTTGAAGGAGGTCATGGCCACCAAGACCAAGATCTTCTTCGTCATGGAGTACGTTCGCGGCGGTGAACTCTTCGCTAAGATCTCCAAAGGAAAGCTCAAAGAAGATGTCGCCAGAAAGTACTTCCAGCAATTGATCAGCGCCATTGATTTCTGCCACAGCAGAGGCGTTTCTCACCGCGACCTCAAGCCGGAGAATCTCCTCCTCGACGACGACGAGAATCTTAAGATATCCGATTTCGGACTTTCCGCCTTGCCGGAGCAGTTGCGCTATGACGGCCTTCTCCACACGCAATGCGGAACTCCTGCTTACGTGGCACCGGAGGTGCTCCGTAAGAGAGGCTACGACGGATCCAAGGCTGACACGTGGTCCTGCGGCGTCATCCTCTACGTGCTGCTCGCAGGGTTCCTTCCCTTCCGCGATGAGAATCTCATGACCATGTACAATAAGGTTCTCAGAGCGGAGTTTCAGTTTCCTCCGTGGTTTTCACCGGAAGCGCGAAGGCTAATTTCGAAGATCATGGTGGCGGATCCGGAGAGGAGAACCACCATTCCAGCGATCATGCGATCGCCATGGTTCCGGAAAGGTTTTCCGGTACCTTCCGCGTTGGAATTGGAAGAAAAGGAGAAGGTTGAGGAAATTTTGGAAGATTCGAGAACGAATGACAAGGTTTCGTCGCCGAAATTCTTCAACGCGTTCGAGTTTATCTCGTCGATGTCGTCCGGATTTGATTTGTCTGGACTGTTTGAGAGCAAGAGGAGGAGCGGATCGATGTTCACTTCGCGGTGTTCGGCGCCGGCGATCGTGGCGAAGATCCTTGCAGCGGCGAAGGGGATGAGGTTCAGGGTGGCGGAGGTGAAGAACTTCAGGATAAAGCTGCAGGGGCCATCGGAGGGGAGGAAGGGGAGGCTGGCAGTGACGGCGGAGGTGTTCGAGGTGGCGCCGGAGGTTGCCATCGTGGAGCTCTCGAAATCCGCCGGCGACACCTTGGAGTACGTTAAATTCTGCGAGGAGGACGTTAGGCCCGCATTGAAGGACATTGTTTGGACTTGGCAAGGTGACGCCACGTGTAACGGTAACCTCACCGCTGGTCACGGTGGGGAATGTCAACAGCAAGAGGTCGTTGCGTAA 1353 0.5447 MEECQCHTVFGKYEMGRLLGKGTFAKVYYGKQIATGESVAIKVINKEQVKREGMMEQIKREISVMGLVKHPNIVELKEVMATKTKIFFVMEYVRGGELFAKISKGKLKEDVARKYFQQLISAIDFCHSRGVSHRDLKPENLLLDDDENLKISDFGLSALPEQLRYDGLLHTQCGTPAYVAPEVLRKRGYDGSKADTWSCGVILYVLLAGFLPFRDENLMTMYNKVLRAEFQFPPWFSPEARRLISKIMVADPERRTTIPAIMRSPWFRKGFPVPSALELEEKEKVEEILEDSRTNDKVSSPKFFNAFEFISSMSSGFDLSGLFESKRRSGSMFTSRCSAPAIVAKILAAAKGMRFRVAEVKNFRIKLQGPSEGRKGRLAVTAEVFEVAPEVAIVELSKSAGDTLEYVKFCEEDVRPALKDIVWTWQGDATCNGNLTAGHGGECQQQEVVA* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2238 450 SMART serkin_6 13 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo10g2238 450 PANTHER - 1 435 - -
Amo10g2238 450 CDD STKc_SnRK3 12 266 - -
Amo10g2238 450 Gene3D Kinase associated domain 1, KA1 299 424 - -
Amo10g2238 450 ProSiteProfiles NAF domain profile. 299 324 IPR018451 GO:0007165
Amo10g2238 450 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 25-RELATED 1 435 - -
Amo10g2238 450 SUPERFAMILY Protein kinase-like (PK-like) 9 285 IPR011009 -
Amo10g2238 450 Gene3D Transferase(Phosphotransferase) domain 1 93 271 - -
Amo10g2238 450 Pfam NAF domain 301 358 IPR004041 GO:0007165
Amo10g2238 450 CDD CIPK_C 305 419 - -
Amo10g2238 450 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
Amo10g2238 450 Gene3D Phosphorylase Kinase; domain 1 4 92 - -
Amo10g2238 450 ProSiteProfiles Protein kinase domain profile. 13 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo10g2238 450 Pfam Protein kinase domain 13 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo10g2238 450 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2238 Amo-Chr10 78507901 78510354 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2238 2 441 CBL-interacting serine-threonine protein kinases AT5G25110 69.196 0.0 647
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Amo10g2238 Pkinase 2.9e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2238 - - gmx:100817520 726.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo10g2238 10 78507901 78510354 Amo20g2689 20 124450122 124452476 hybridization