Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2231 ATGGAAACAACATGCGTGGATACGTCTCTCACCCTCAACCTTGTTTCCCTTCACAAAACGGATGTTGCGCCGGAGGTTTTGGTTGAAGAATTGCATCGGCTAAGCTGTGAGAACAAGAAGCTAACGGAGACATTGAAGCAAGTATGTGAGAACTATGTTGCCTTGAAAACCAAGCTCAGCCAACTGAGCAGCAATAACATGGTGAGTTCCGAGAAAGAAGCCGCGGCGTCAGGGACGCCAACGCGGAAGAGAAAGGCGGAGAGTGAGAGCTGCATGAGTACCTATACTGATAAGTGCAACACCCCGACTAGTACGGACGAAGAAACACTAAAAAGAGCTAAGCATGAAGGTTCGCCAAAGGTTTCCAAGATTGTTGTACGAACTGAAGCATCTGATACTACCAGCTTATATGTGAGGGATGGATATCAATGGAGAAAATATGGGCAGAAAGTGACCAGAGATAACCCCTCTCCTAGGGCTTACTTCAGGTGCTCCAATGCCCCAAATTGCCCCGTCAAGAAGAAGGTGCAAAGGAGTGCAGAAGATCGAAGAATGTTGGTGGCAACATACGAAGGAGAGCACAACCATGTGCAAGCGCAAGATTCTTATTATTCATCAAGCCTGCAAAGTGATGATCATTATCAAAGCCCTACTAGAGTTGACTTGGTCAATAAGTCAGAATTATTAGAATCGGTTGGCAATAACAATGATGGAAAAAAGTCTTCTTGTATGCGGCTGCAGCCCCAGCTGTTAGCTCAACAAATGGCCACTTCTTTGACTAAGGATCCCAATTTCACCGCCGCACTTGCAACCGCCATTACAGGAAGAATTCTATCTTCACACTTCTCCCAATAA 855 0.4585 METTCVDTSLTLNLVSLHKTDVAPEVLVEELHRLSCENKKLTETLKQVCENYVALKTKLSQLSSNNMVSSEKEAAASGTPTRKRKAESESCMSTYTDKCNTPTSTDEETLKRAKHEGSPKVSKIVVRTEASDTTSLYVRDGYQWRKYGQKVTRDNPSPRAYFRCSNAPNCPVKKKVQRSAEDRRMLVATYEGEHNHVQAQDSYYSSSLQSDDHYQSPTRVDLVNKSELLESVGNNNDGKKSSCMRLQPQLLAQQMATSLTKDPNFTAALATAITGRILSSHFSQ* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2231 284 Pfam WRKY DNA -binding domain 140 196 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo10g2231 284 MobiDBLite consensus disorder prediction 65 115 - -
Amo10g2231 284 SUPERFAMILY WRKY DNA-binding domain 135 196 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo10g2231 284 Gene3D WRKY domain 120 198 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo10g2231 284 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 1 282 IPR044810 GO:0003700
Amo10g2231 284 MobiDBLite consensus disorder prediction 77 91 - -
Amo10g2231 284 ProSiteProfiles WRKY domain profile. 133 196 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo10g2231 284 Coils Coil 31 58 - -
Amo10g2231 284 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 1 282 - -
Amo10g2231 284 SMART WRKY_cls 138 198 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2231 Amo-Chr10 77808897 77811512 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2231 3 277 WRKY Transcription Factor Family AT1G80840 42.712 7.30e-63 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo10g2231 WRKY 5.3e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2231 - - gmx:100127373 279.256