Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2196 ATGCAGCTTCAGTTTATAGATGAGGAAGCTATTTATCGGTTCTACAAGACTTATGCAATGATGCACGGTTTCGCTGTGAGGTTGGATGAAGTCAGACACAATAGTGATGGTTGCGTAATTATGCGCCAAATTGTTTGCAATTGGGCGGGATCAAGAAAGGAAGAGGAGGTCAGGAAGGAAATTGAGGGTGCTTGTGCTATGAATACAGAGATGGTAATTCAGGATGGTGGAAAACTATACTTCAAGTATAACAGTCTTGGAGTGCCAGAGATTGATCATATGGTTCAGTTTGACAGAGTTGGGGGGATGCTTCGTTGTGAAACGCTTAGTGTGCAAGCGTTGGACGAGAATGCCAAGAGTGATTTCATGAAGTCAAACATCGATGATCTAAGGGATTGTGATAAGAGTAAAGGAGCTCCCAAGAAAAACTCAAAATTTAAGCAACAGAGAAGGTGTTCAAACTGCGGTGTGACAGGGCACTACAAGAAAAGTTGTCCTAATGTTCCTGGTAGAATCCCAAAGGAGCCAGTAGACGATGATACAGAAAAGAATATCAGTAGCCATCTTGACATCCTCACTAAGAAGATGGAAAAAGATAGGAACATTGGTGGTGGAACAGCACCAACCTCAGCAGCTAAATCGGCTTTTACTGATCAAGTGAAAACATCAAGTGCTGGTCCCGATATCTCGGTTTGTGCATCTACAAGTAACGAAGAGTCCAGAATGAGTTCCAGACCGGTTGGGTCTCCTGTTGTGGCCCCTGAAACTGGAATGGCAGATTGA 783 0.4355 MQLQFIDEEAIYRFYKTYAMMHGFAVRLDEVRHNSDGCVIMRQIVCNWAGSRKEEEVRKEIEGACAMNTEMVIQDGGKLYFKYNSLGVPEIDHMVQFDRVGGMLRCETLSVQALDENAKSDFMKSNIDDLRDCDKSKGAPKKNSKFKQQRRCSNCGVTGHYKKSCPNVPGRIPKEPVDDDTEKNISSHLDILTKKMEKDRNIGGGTAPTSAAKSAFTDQVKTSSAGPDISVCASTSNEESRMSSRPVGSPVVAPETGMAD* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2196 260 SUPERFAMILY Retrovirus zinc finger-like domains 136 173 IPR036875 GO:0003676|GO:0008270
Amo10g2196 260 MobiDBLite consensus disorder prediction 194 260 - -
Amo10g2196 260 Pfam FAR1 DNA-binding domain 13 60 IPR004330 -
Amo10g2196 260 MobiDBLite consensus disorder prediction 207 244 - -
Amo10g2196 260 Gene3D - 130 196 - -
Amo10g2196 260 ProSiteProfiles Zinc finger CCHC-type profile. 150 167 IPR001878 GO:0003676|GO:0008270
Amo10g2196 260 SMART c2hcfinal6 151 167 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2196 Amo-Chr10 77006333 77008746 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo10g2196 FAR1 5e-07 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2196 - - aip:110267887 278.87