Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2195 ATGGATACACAACAACAACAACCTCATCATCATCGGTGTGATAAAATTGCAAGCAAGAAACCATGGCAGAGTTCACAAGAAGATCAAAAGGAGCATCAGCAAGAGCAAGTAGATACTACTTTGTTGGATCTGAATCTGAATGTCCATGATGATGATGAGTGCAGCACAGAGTTGAGCCTCATCACGTGTTTGGACATGGATAATTCCTCAAAAACTACTTCAATTGAAGACAACAACAACAACAACACATGTTGTGCAGGTTCTGATCAAAGAGTGTTCTCTTGCAACTACTGCCAGAGGAAATTCTACAGTTCACAAGCTCTTGGAGGACACCAAAATGCTCACAAGAGAGAGAGATCAATTGCAAAGAGAGGTCAGAATAGGTTATTAGGATCCTCTCCATTTATGATCCCTTTTCTTCATCATCATCATAGATATGCTAGTATTGCATCTTTACCTCTCTATGGTGCTTGTGCAAACAAACCACTTGGAATTCAAGCTCACTCCTTGATTCACAAACCTTCTTTTGTTCATCATCATCATCATATATCAAATGGCTTTGGAAGACCACCTCCCCTCATTGGAAGTAGTAGTGTTGGTAGATTCCAGGTGGCCAAGAACATGCTCAATTCTGCAGCAGATAATGAAGAAATCACAGCTTATCTTGTTACTAGGACTACTCAAGAAGACAATATAATGACCAAGAATAATAAGCACCTTGATTTATCTCTTAAACTCTAG 741 0.3941 MDTQQQQPHHHRCDKIASKKPWQSSQEDQKEHQQEQVDTTLLDLNLNVHDDDECSTELSLITCLDMDNSSKTTSIEDNNNNNTCCAGSDQRVFSCNYCQRKFYSSQALGGHQNAHKRERSIAKRGQNRLLGSSPFMIPFLHHHHRYASIASLPLYGACANKPLGIQAHSLIHKPSFVHHHHHISNGFGRPPPLIGSSSVGRFQVAKNMLNSAADNEEITAYLVTRTTQEDNIMTKNNKHLDLSLKL* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2195 246 MobiDBLite consensus disorder prediction 1 36 - -
Amo10g2195 246 ProSitePatterns Zinc finger C2H2 type domain signature. 95 115 IPR013087 -
Amo10g2195 246 Gene3D Classic Zinc Finger 68 133 - -
Amo10g2195 246 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 7 187 IPR044246 GO:0009788
Amo10g2195 246 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 196 246 IPR044246 GO:0009788
Amo10g2195 246 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 196 246 - -
Amo10g2195 246 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 7 187 - -
Amo10g2195 246 SUPERFAMILY beta-beta-alpha zinc fingers 89 120 IPR036236 -
Amo10g2195 246 ProSiteProfiles Zinc finger C2H2 type domain profile. 93 120 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2195 Amo-Chr10 76889928 76891097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2195 88 246 C2H2 Transcription Factor Family AT1G80730 48.276 3.29e-33 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2195 - - aip:107621568 463.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo10g2195 10 76889928 76891097 Amo20g2653 20 123027592 123028839 hybridization
Amo06g2817 06 93397475 93398344 Amo10g2195 10 76889928 76891097 PCT
Amo10g2195 10 76889928 76891097 Amo06g2817 06 93397475 93398344 PCT