Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2187 ATGAAGGGGTCGAATTTGATTCGGGCAAATGCATCATGCATGAAATTGAAGGAGAAGATCCGCCAGCTGAAGAAGAAGTTTGAGAACAACCTAGAAAAAGAGAAGAACGGCAAGGGGACAACCTTAAAGCCGCACGAGTTGGAAGCACTTCAGTTGGGAAAGAATGTTTGGGGCCACGATGGTTGTGGCGGTGAAACAGTGCTCAACGAAACTGCAAAAAAGGATACAGTTAATAATGAGAAGGCTGCGAAGATTACTTCCAAGAAGGCACTAGTGCCCCATTCAAATGAAAAAGCTGAAGCAAAGTCCAAACTAAATTCTGAACCTTTGGATTCAAATGAAGATAGCTAA 351 0.4302 MKGSNLIRANASCMKLKEKIRQLKKKFENNLEKEKNGKGTTLKPHELEALQLGKNVWGHDGCGGETVLNETAKKDTVNNEKAAKITSKKALVPHSNEKAEAKSKLNSEPLDSNEDS* 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2187 116 Pfam Protein of unknown function, DUF573 7 58 IPR007592 GO:0006355
Amo10g2187 116 MobiDBLite consensus disorder prediction 91 116 - -
Amo10g2187 116 Coils Coil 6 37 - -
Amo10g2187 116 MobiDBLite consensus disorder prediction 73 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2187 Amo-Chr10 76734945 76736173 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2187 7 58 GeBP Transcription Factor Family AT1G11510 50.943 4.15e-09 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Amo10g2187 DUF573 1.9e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2187 - K05636 adu:107470510 217.624