Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2179 ATGGATTGGATTAATGTTAGAAAGCTAAAATTATGTTTCAGGAAAACAAGGATATGGCTTGGAACGTTTGAGACAGCAGAAGATGCAGCAAGAGCGTACGATGAAGCAGCAAGGTTGATGTGTGGAACAAGAGCCAGAACCAACTTCCCTTACAACCCTGATTCCTCTCACTCCACGCCATCTAAGCTTCTCTCTGCTACTTTAACCGCTAAGCTTCACAGGTGTTACATGGCCTCTCTTCAAATCACTAGACCTTCTCCCAACAACAATGGCGCCTTTTCCACTGCACCAACACCCACCATCCAACAGAAGAGACCACACAAGGATGAACAACAGCAACAGCAACAGCAACAAGAACAACAATGTTCATCTTCATTGGAAGATGGCAACTGGGTTTCCATGAAGAAGGTTAAAGTGGAAAATCATGAGTTTATTAAGCCTCTTGAAGAAGATCACAATCACATTGAGCAAATGATTCAGGAGTTGCTTCATTATGGCTCCATTGAGCTCTGTTCTCTTTAA 522 0.4291 MDWINVRKLKLCFRKTRIWLGTFETAEDAARAYDEAARLMCGTRARTNFPYNPDSSHSTPSKLLSATLTAKLHRCYMASLQITRPSPNNNGAFSTAPTPTIQQKRPHKDEQQQQQQQQEQQCSSSLEDGNWVSMKKVKVENHEFIKPLEEDHNHIEQMIQELLHYGSIELCSL* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2179 173 MobiDBLite consensus disorder prediction 113 127 - -
Amo10g2179 173 CDD AP2 12 52 IPR001471 GO:0003700|GO:0006355
Amo10g2179 173 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 9 171 - -
Amo10g2179 173 SUPERFAMILY DNA-binding domain 13 52 IPR016177 GO:0003677
Amo10g2179 173 ProSiteProfiles AP2/ERF domain profile. 1 50 IPR001471 GO:0003700|GO:0006355
Amo10g2179 173 Gene3D AP2/ERF domain 3 51 IPR036955 GO:0003700|GO:0006355
Amo10g2179 173 MobiDBLite consensus disorder prediction 82 127 - -
Amo10g2179 173 Pfam AP2 domain 13 42 IPR001471 GO:0003700|GO:0006355
Amo10g2179 173 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003 9 171 - -
Amo10g2179 173 MobiDBLite consensus disorder prediction 82 102 - -
Amo10g2179 173 SMART rav1_2 6 56 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2179 Amo-Chr10 76635894 76636486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2179 6 173 AP2-EREBP Transcription Factor Family AT5G25190 51.744 1.13e-47 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo10g2179 AP2 5.2e-06 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2179 - - adu:107470449 301.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo10g2179 10 76635894 76636486 Amo20g2642 20 122740447 122741498 hybridization
Amo06g2822 06 93464158 93465293 Amo10g2179 10 76635894 76636486 PCT
Amo10g2179 10 76635894 76636486 Amo06g2822 06 93464158 93465293 PCT