Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2174 ATGTGTTGCAATTCCTCAAAAGACACACAACAAACATTGAAAATGAACCCTGTTCCTATGATTCTCTCCATGTTCCTGAACCTCCTTCTTCACCGTGCAGTTGCACAAGCACCACACCGCCCTCCTTTTCATTCTCCTGCACCCGCACCTGCACCTGCACCTGTTCCTGTTTCTCAACCCATTGCTCCACTTTTCACCTCCAATCCCATCCCTGCAGCTCTCTCTCCTGGATTTCAGGTTGGGGAACAACAACAGCACCGAAAAAGTTCACACAACAAAACGGTGGTTATATCTGTGGCCGTAGCCACCGGTGCAGTTGGTGCAGTTATTCTCACTTTGCTATGCTTCTGGATTTGCCATACCAAGCGTCCCTCAAAATCAAACAAGAAGAATCAAAGTCTTCACATCTCAGATACAGTGGAGAAAGGGCTCATAGGAATGAAGACGATTGGTATGAAAGGTTGTGCTCCAATCATTGATTATAAGGAAATAGAGAAAAGCACGAATAATTTTGACGAAAGTAACATCTTGGGTGAAGGAGGTTTTGGATGTGTTTACAAGGCTCATTTGGATGATAATCTTGTTGTTGCTGTTAAGAAGCTACACTGTCAAACTCAAAATGCTGAGAGAGAATTCGAGAATGAGGTCCAGTTGTTGAGCAAAATTCAGCATCCCAATATAATTCCTCTGCTGGCTTGTAGCATTAATGGGGACACCAGGTTCATCGTATATCAGTTGATGCAAAATGGATCCTTAGAAGCTCACTTACATGGTAACAATCAAATTTTAAATTATCTTAGTTCTACTGATATCTTTATTTTCCACCAAACAAAAAATGACGATGAAGGATCTACTAGAGGGTCTGCATTGACTTGGAACATGAGGATGAAGATTGCTCTTGACACGGCAAGAGGATTAGAATATCTGCATGAGCATTGTCACCCTCCTGTCATCCATAGAGATATGAAATCTTCCAATATTCTTTTGGATGCAAACTTCAACGCTAAGCTATCTGATTTTGGGCTTGCCATAACTGATGGGTCCCAAAGCAAGAAGAACATTAAGCTTTCAGGCACATTGGGGTACGTAGCCCCAGAGTACCTTTTAGATGCAAGTGATATTTATGTATTGATAGGGAAATTGACAGATAAAAGCGATGTGTATGCATTTGGGGTTGTACTTCTTGAACTTCTGTTAGGAAGGAAGCCTGTGGAGAAACTGGCACCAGCTCAATGCCAATCTATTGTCACATGGGCGATGCCGGCACTCACAGACAGATCCAAACTTAGGAACATTGTGGATCCAGTGATCAAAGATACAATGGATGTCAAGCACTTATACCAGGTTGCTGCTGTTGCTGTTCTCTGTGTTCAGCCTGAGCCAAGTTACCGTCCTCTAATCACTGATGTTCTTCATTCACTTGTCCCTCTTGTTCCCATTCATCTTGGAGGAACACTCAGATCTCATTGA 1470 0.4265 MCCNSSKDTQQTLKMNPVPMILSMFLNLLLHRAVAQAPHRPPFHSPAPAPAPAPVPVSQPIAPLFTSNPIPAALSPGFQVGEQQQHRKSSHNKTVVISVAVATGAVGAVILTLLCFWICHTKRPSKSNKKNQSLHISDTVEKGLIGMKTIGMKGCAPIIDYKEIEKSTNNFDESNILGEGGFGCVYKAHLDDNLVVAVKKLHCQTQNAEREFENEVQLLSKIQHPNIIPLLACSINGDTRFIVYQLMQNGSLEAHLHGNNQILNYLSSTDIFIFHQTKNDDEGSTRGSALTWNMRMKIALDTARGLEYLHEHCHPPVIHRDMKSSNILLDANFNAKLSDFGLAITDGSQSKKNIKLSGTLGYVAPEYLLDASDIYVLIGKLTDKSDVYAFGVVLLELLLGRKPVEKLAPAQCQSIVTWAMPALTDRSKLRNIVDPVIKDTMDVKHLYQVAAVAVLCVQPEPSYRPLITDVLHSLVPLVPIHLGGTLRSH* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2174 489 SUPERFAMILY Protein kinase-like (PK-like) 155 474 IPR011009 -
Amo10g2174 489 PANTHER OS01G0750732 PROTEIN 283 488 - -
Amo10g2174 489 PANTHER OS01G0750732 PROTEIN 70 262 - -
Amo10g2174 489 Gene3D Transferase(Phosphotransferase) domain 1 247 479 - -
Amo10g2174 489 Gene3D Phosphorylase Kinase; domain 1 137 245 - -
Amo10g2174 489 PANTHER BNAA04G14780D PROTEIN 283 488 - -
Amo10g2174 489 ProSitePatterns Protein kinases ATP-binding region signature. 177 200 IPR017441 GO:0005524
Amo10g2174 489 ProSiteProfiles Protein kinase domain profile. 171 475 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo10g2174 489 Pfam Protein tyrosine and serine/threonine kinase 175 416 IPR001245 GO:0004672|GO:0006468
Amo10g2174 489 ProSitePatterns Serine/Threonine protein kinases active-site signature. 317 329 IPR008271 GO:0004672|GO:0006468
Amo10g2174 489 SMART serkin_6 171 475 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo10g2174 489 CDD STKc_IRAK 177 477 - -
Amo10g2174 489 PANTHER BNAA04G14780D PROTEIN 70 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2174 Amo-Chr10 76581685 76585259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2174 128 478 Receptor kinase-like Gene Family AT3G58690 41.854 1.03e-87 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Amo10g2174 PK_Tyr_Ser-Thr 2.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2174 - - ahf:112784689 834.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo10g2174 10 76581685 76585259 Amo20g2639 20 122675548 122679141 hybridization
Amo16g3689 16 147903293 147909295 Amo10g2174 10 76581685 76585259 PCT
Amo06g2826 06 93499379 93502803 Amo10g2174 10 76581685 76585259 PCT
Amo10g2174 10 76581685 76585259 Amo16g3689 16 147903293 147909295 PCT
Amo10g2174 10 76581685 76585259 Amo06g2826 06 93499379 93502803 PCT