Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2166 ATGGCTTCACACATAATTAACAATGGTCTCAAAGCATCAAATGAGATCTTTGAAGGCCAAGTTCAGTTGTACAAACACATGTTTGCATTCTTAGATTCTCTTTGCCTTAAGTGGTGTGTGGATCAAAGCATACCAAACATAATCCACAACCATGGTCAACCTATGACTCTTCATGAGTTGGTTTCCAAGTTACAAGTTCCATTAGCTAAGGTTAGTGGTGTGCACCGTTTAATGCGTTATCTTGCACACATTGGATTCTTTGACATACTGCTTGTTAGAGGTAGTGATCATTGTTTAGCTCCAATGGTTGACCATGTTCTTGACCCAACTATCTCAAGTTCATACCAACAACTTGGGAAGTGGATTCATGATGAGGGGAATCAAACACCATTTGCCATGGCATTGGGTACAGATATTTGGGACTTTCTTAACAAAAACCCTACACATATGAAATACTTCAATGATGCAACTGCTAATCATGGTGTTGTCTTTGAAGGATTGGAATCGATTGTAGATGTTGCTGGAGGAACTGGAATGGTAGCCAAGTATATCTCTGAGACTTTTCCACATTTGAAATGCATAGTTTTTGATCTTCCACAGGTTGTGAAAAATCTTAAAGGAACCAACAATTTGAGTTATGTCGGTGGGGACATGTTTCAATCTATCCCTAAAGCTGATGCAGTTCTACTTAAGTGGTGTGTTGACCAAAGCATACCAATCGCAAACATAATCCACAACCACGGTCAACCTATGACTCTTCATGAGTTGGTGTCAACTTTGAAAGTTCCACTGGCTAAGGAACTGCTTGTTAGAGATAGTGATCATTGTTTAGCTCCAATAATGGTTGACCTTATTCTTGACCCAACTATCTCAAGTTCATACCAAACAACTTGGGAAGTATGTATGTATTACAATAATGTTTTATTTGTCGGATTTAAATTAGCTTGGTGTGTTGACCAAAGCATACCAAACATAATCCACAGCCATGGTCAACCTATGACTCTTCATGAGTTGGTGTCAACTTTGAAAGTTCCACTGGCTAAGGTAAGTGGTGTGCACCGTTTAATGCGTTATCTTGCACACATTGGATTCTTTGACATAGTAAGAATTAGCCAAGAAGATGAAGAAGAAAAGGAAGCATATGCTCTTACTTATGTCTCAAAGCTTCTTGTTAGAGGTAGTGATTATTGTTTAGCTCCAATGGTTGACCTTATGCTTGACCCTACTTTCTCAAGTTCATACCAACAACTTGGGAAGTGGATTCATGATGAGGGAATCAAACACCATTTGCCGTCGCCATGGGAACAGCTAAAAATACAAGAGAAAGAAAGCTTTGGTGGAAGAACACTTATTGCTCAAGTGTTTGTTATAAATGATTTACACACGACTTACACTAACTCTCACCTCCTACTTATAAATCTATTGCTCCTCTCTCTCATTCACTCGTCAAATCTATGTTTTCATAATCTACATTCAATATATAAAATAGATAATATAATAAAAAATTCAAAAGACAATAAAAAATTAATCAAAAATATTTATTTTGAATATTTCTCAAATATTAATTATTTTGTTTTATATTTTTTTAATTATTATAAAATAATTGAGTAA 1611 0.3606 MASHIINNGLKASNEIFEGQVQLYKHMFAFLDSLCLKWCVDQSIPNIIHNHGQPMTLHELVSKLQVPLAKVSGVHRLMRYLAHIGFFDILLVRGSDHCLAPMVDHVLDPTISSSYQQLGKWIHDEGNQTPFAMALGTDIWDFLNKNPTHMKYFNDATANHGVVFEGLESIVDVAGGTGMVAKYISETFPHLKCIVFDLPQVVKNLKGTNNLSYVGGDMFQSIPKADAVLLKWCVDQSIPIANIIHNHGQPMTLHELVSTLKVPLAKELLVRDSDHCLAPIMVDLILDPTISSSYQTTWEVCMYYNNVLFVGFKLAWCVDQSIPNIIHSHGQPMTLHELVSTLKVPLAKVSGVHRLMRYLAHIGFFDIVRISQEDEEEKEAYALTYVSKLLVRGSDYCLAPMVDLMLDPTFSSSYQQLGKWIHDEGIKHHLPSPWEQLKIQEKESFGGRTLIAQVFVINDLHTTYTNSHLLLINLLLLSLIHSSNLCFHNLHSIYKIDNIIKNSKDNKKLIKNIYFEYFSNINYFVLYFFNYYKIIE* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2166 536 Gene3D - 7 95 IPR036388 -
Amo10g2166 536 SUPERFAMILY "Winged helix" DNA-binding domain 13 89 IPR036390 -
Amo10g2166 536 PANTHER FLAVONOID 4'-O-METHYLTRANSFERASE 8 234 - -
Amo10g2166 536 PANTHER FLAVONOID 4'-O-METHYLTRANSFERASE 238 264 - -
Amo10g2166 536 PANTHER O-METHYLTRANSFERASE 8 234 IPR016461 GO:0008168
Amo10g2166 536 PANTHER O-METHYLTRANSFERASE 238 264 IPR016461 GO:0008168
Amo10g2166 536 SUPERFAMILY "Winged helix" DNA-binding domain 308 394 IPR036390 -
Amo10g2166 536 Gene3D Vaccinia Virus protein VP39 96 261 IPR029063 -
Amo10g2166 536 Gene3D - 309 428 IPR036388 -
Amo10g2166 536 PANTHER O-METHYLTRANSFERASE 312 424 IPR016461 GO:0008168
Amo10g2166 536 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 24 330 IPR016461 GO:0008168
Amo10g2166 536 Pfam Dimerisation domain 35 82 IPR012967 GO:0046983
Amo10g2166 536 Pfam Dimerisation domain 316 360 IPR012967 GO:0046983
Amo10g2166 536 PANTHER FLAVONOID 4'-O-METHYLTRANSFERASE 312 424 - -
Amo10g2166 536 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 96 234 IPR029063 -
Amo10g2166 536 Pfam O-methyltransferase domain 115 233 IPR001077 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2166 Amo-Chr10 76430854 76441160 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2166 34 237 Monolignol Biosynthesis Gene Families AT5G54160 30.833 2.24e-22 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2166 K22588 - ag:AAC49926 279.256