Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2133 ATGTTATTTTTTCCAACTAAGATTGCACTTTTTATTCTTCTTTCTATTACTCTATCTCCACTGTCTTTTCTGTCAGGAAGAGAAGAACTCCAAAGCTTAAAGAAGAAACTTCCCACACTGCTATTCTCTTTTCTTCCCTTCCCCTGCATCCAATTTGGAATGTATGTAAATTTTCTTTCTTCCATGAACGAAGCCCGAATTGAAATCACGATTCCACACTTGTTCAGATGCCCAATAAGCTTAGACTTGTTGGAAGATCCAGTGACACTATGCACAGGCCAAACCTATGACAGATCAAGCATTGAAAAATGGCTTTCTGCTGGTAACCTCACTTGCCCAGTCACAATGCAGAAGCTTCACGATCCTTCCATTGTTCCCAACCACACTCTCCGCCACTTGATCGACCAGTGGCTCCAACTTGGCCACCAATTCCACCCTGGAAACTCCGCAACAATCGATTACTTGACCAGCCTCAAACACGCTCTCCAGTCTCCTGACTCCTCCTTGGACCACAAGTTACAAGCACTCCACCAGATTCAACTACTCTCCGACGAGTACTGCTCCTTTAAGCGCTCATGCTTTAACCAACTGAGCTATTTGACGCTTCTATTACAACTTGTTTTTGAAACAAGATCCATGGAATTCACAGAGCTGGCGCTTTCTTGCATCGTAAAGTTGCTTCCTCTCGTGAATTTGGATCCGCTGAACATGATCAAAGACGAGTCGAAGCTATCAACGTTTGTTTCGTTATTGGAAAAGGGAACAACCAAAACCAAAACTAGCTTGTGCCATCTCATAGATTCAACCGCAACATCAACACAAACGCAAGAGTTATGTCACGTGCTTGGAAATTCACGGAAGGTGATAGAAGAGATTGTGAGACTAGCTCGCGAAATCCAGGAGGAAGAGTCATCTAAAGCAGGAATCAAAGCCATGTCAGCATTATGCAGCTTGCAATCGAACAGAGAGAGTTTGGTGAGAGGAGGAGCAATTGATGGAGTGATAGCATACATGTCGGGATCTGACAAGTTGCAGAAGAATTTGGCTCCAATGGCAATGGGGATAATAGAGAAGCTTGTGGTGTTAGAGAGTGGGAAAGTGGGAGTGGTGAACCACCCGAGTGGTATTCAAACGGTGGTGAAGATGGTGTTCAGGGTTTGCAACAACCAAGAGTATTGCTGTAGTGAGGTTGCTGTTGGGGTGCTTTTGGTAATTTGTCGTGATTATGGGGTTGCAAGAGAGGAAGCCATTGGAGCTGGGATCTTGACTCAGTTGCTTTTCCTTCTTCAGAGTCAGTGTGGTAACAAAACCAAGACCAAGGCCAGGATGCTTCTCAAGTTGTTGAGATCCAAGTGGAATCAGGAATCAAACAACAAACTATGA 1383 0.4432 MLFFPTKIALFILLSITLSPLSFLSGREELQSLKKKLPTLLFSFLPFPCIQFGMYVNFLSSMNEARIEITIPHLFRCPISLDLLEDPVTLCTGQTYDRSSIEKWLSAGNLTCPVTMQKLHDPSIVPNHTLRHLIDQWLQLGHQFHPGNSATIDYLTSLKHALQSPDSSLDHKLQALHQIQLLSDEYCSFKRSCFNQLSYLTLLLQLVFETRSMEFTELALSCIVKLLPLVNLDPLNMIKDESKLSTFVSLLEKGTTKTKTSLCHLIDSTATSTQTQELCHVLGNSRKVIEEIVRLAREIQEEESSKAGIKAMSALCSLQSNRESLVRGGAIDGVIAYMSGSDKLQKNLAPMAMGIIEKLVVLESGKVGVVNHPSGIQTVVKMVFRVCNNQEYCCSEVAVGVLLVICRDYGVAREEAIGAGILTQLLFLLQSQCGNKTKTKARMLLKLLRSKWNQESNNKL* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2133 460 Pfam U-box domain 71 139 IPR003613 GO:0004842|GO:0016567
Amo10g2133 460 SUPERFAMILY ARM repeat 154 440 IPR016024 -
Amo10g2133 460 SUPERFAMILY RING/U-box 63 139 - -
Amo10g2133 460 PANTHER WDSAM1 PROTEIN 70 451 IPR045185 GO:0061630
Amo10g2133 460 SMART Ubox_2 74 137 IPR003613 GO:0004842|GO:0016567
Amo10g2133 460 CDD RING-Ubox_PUB 75 117 IPR045210 -
Amo10g2133 460 ProSiteProfiles U-box domain profile. 70 144 IPR003613 GO:0004842|GO:0016567
Amo10g2133 460 PANTHER OS02G0542800 PROTEIN 70 451 - -
Amo10g2133 460 Gene3D - 242 460 IPR011989 -
Amo10g2133 460 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 146 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2133 Amo-Chr10 75582084 75583868 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2133 69 452 U-box Gene Family AT3G19380 32.997 1.87e-54 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2133 - - aip:107624179 870.152