Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2053 ATGAACCATTATTGTACTGCAAAAAAAAAAAGAAAACAAAAAACAAAAGAACACTTTCGCCAATTCACTAGTCAGATCCCACTGCAACTCGCGACACATTGTTCTGGAACGAAGATGAAGGTTATCGCCGCCTATCTCCTCGCTGTTCTCGGCGGCAACACTTCCCCTTCCGCCGGCGACATCAAGGACATCCTCGGCTGCGTTGGAGCTGAAGCTGATGATGAAAGGATAACGCTTCTTTTGTCTGAAGTGAAAGGCAAAGACATAACAGAGGTCATTGCCGCCGGTAGGGAAAAGCTTGCTTCGGTGCCTGCCGGTGGTGGCGGTGCTGTGGCCGTTGCCGCTGCTCCTAGCGGAGGTGCTGCTGCTCCCTCAGCCTCCGAGTCAAAGAAAGAGGAGAAGGTTGAAGAGAAGGAAGAATCAGATGATGTAAGTCACTGCTATTACTACTACAATTACTATTACTATTATTATTATTGTAATCTGATTGTTTTGTTTGTGTTACAGGATATGGGATTCAGTCTCTTTGACTAA 534 0.4625 MNHYCTAKKKRKQKTKEHFRQFTSQIPLQLATHCSGTKMKVIAAYLLAVLGGNTSPSAGDIKDILGCVGAEADDERITLLLSEVKGKDITEVIAAGREKLASVPAGGGGAVAVAAAPSGGAAAPSASESKKEEKVEEKEESDDVSHCYYYYNYYYYYYYCNLIVLFVLQDMGFSLFD* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2053 177 MobiDBLite consensus disorder prediction 119 138 - -
Amo10g2053 177 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 24 143 IPR044076 GO:0002182|GO:0003735|GO:0022625
Amo10g2053 177 CDD Ribosomal_P2 39 102 IPR044076 GO:0002182|GO:0003735|GO:0022625
Amo10g2053 177 Gene3D - 38 97 IPR038716 -
Amo10g2053 177 Hamap 50S ribosomal protein L12 [rpl12]. 40 177 IPR027534 GO:0003735|GO:0005840|GO:0006414
Amo10g2053 177 Pfam 60s Acidic ribosomal protein 55 143 - -
Amo10g2053 177 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P2A-LIKE 24 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2053 Amo-Chr10 74009330 74010134 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2053 39 108 Cytoplasmic Ribosomal Protein Gene Family AT2G27710 72.857 5.11e-30 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2053 K02943 - tcc:18598192 119.398