Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2042 ATGGCTCCTGCCACCTCACCGGCGCGGTCGGCCAAGAGGCTCATCGGCTTTAGCCGCCGGACGCAGGCAATTCACCCGCACGGTCAGCAGTCGCCGTGCGGGCCGCCGGCGAAGAAGTACAAGTCGATGACGGACATAATGGCGAGGGCGCCGTACGCCGTCGTGGAGCGCGAAGATTACGGCGACCTCAGCTGCGAGCAATGCGGCTCCGGCGAGCGGCCGGAGGAGCTGCTTCTCTGCGACAAATGCGACAGAGGGTTCCACATGAAATGCGCGAGGCCTATCGTCGTTAGGGTTCCTATTGGATCCTGGCTTTGCCCTGAATGCGTTGGAAGCAACAACAGACAGAGAAGAATAAAAAGCTTCTCGCAGCGTAAGTTAATTGATTTCTTCGGGATTCAGAGGAGCGACAATGATCACGTTAGAGCTGCTTCTTCTCAAGATGCTAAGAAGCGTCGAAGACGATCACGCCCTCTGGTTATGCACAAGAGAAGGAGGAGATTATTACCATTTATTCCTTCAGAAGATTCGAACCAAAGAAATAAACAGATGAATTCACTTGCTACTGCTTTATCAGCATTGCATATGGATTTTAGCGATGACCTCAGATACTTGCCTGGAATGGCTCCTAGATCTGCTAATCAAGCCATATTAGAAGATGGTGGCATGCAGATTCTTTCAAAGGAAGATATGGAGACCTTGGAACACTGCAGAGCTATGTCTAGAAGAGGCGAATGTGCCCCCTTTCTAATTGTTTATGATGCACGCGAAGGCTATACTGTGGTGGCTGATGCTCCAATCAAGGATTTGACATTTATTGCGGAATACACGGGCGATGTGGATTACCTTAAGAATCGAGAAAGTGATGATTGTGACAGTATGATGACCCTTCTTTTATCAAGTGATCATTCTCAAAGTCTTGTCATCTGTGCTGATAAACGCGGAAACATTGCTAGGTTTATTAATGGCATCAACAATCATACTCCGGAAGGTAGGAAGAAGCAGAACTGTAAATGTGTGAGATACAATGTTAACGGTGAATGCAGGGTCCTTTTGGTTGCTACTCGTGATATTTCTAAGGGCGAGAGGCTTTATTATGATTATAATGGTTATGAGCATGAATACCCCACACATCATTTTGTCTAA 1146 0.4764 MAPATSPARSAKRLIGFSRRTQAIHPHGQQSPCGPPAKKYKSMTDIMARAPYAVVEREDYGDLSCEQCGSGERPEELLLCDKCDRGFHMKCARPIVVRVPIGSWLCPECVGSNNRQRRIKSFSQRKLIDFFGIQRSDNDHVRAASSQDAKKRRRRSRPLVMHKRRRRLLPFIPSEDSNQRNKQMNSLATALSALHMDFSDDLRYLPGMAPRSANQAILEDGGMQILSKEDMETLEHCRAMSRRGECAPFLIVYDAREGYTVVADAPIKDLTFIAEYTGDVDYLKNRESDDCDSMMTLLLSSDHSQSLVICADKRGNIARFINGINNHTPEGRKKQNCKCVRYNVNGECRVLLVATRDISKGERLYYDYNGYEHEYPTHHFV* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2042 381 MobiDBLite consensus disorder prediction 139 159 - -
Amo10g2042 381 Pfam SET domain 292 369 IPR001214 GO:0005515
Amo10g2042 381 ProSiteProfiles Zinc finger PHD-type profile. 62 112 IPR019787 -
Amo10g2042 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 125 IPR013083 -
Amo10g2042 381 PANTHER HISTONE ACETYLTRANSFERASE 8 379 - -
Amo10g2042 381 CDD SET_ATXR5_6-like 244 381 - -
Amo10g2042 381 SUPERFAMILY SET domain 241 369 IPR046341 -
Amo10g2042 381 SMART set_7 247 375 IPR001214 GO:0005515
Amo10g2042 381 Pfam PHD-finger 65 110 IPR019787 -
Amo10g2042 381 ProSitePatterns Zinc finger PHD-type signature. 65 109 IPR019786 -
Amo10g2042 381 ProSiteProfiles SET domain profile. 247 369 IPR001214 GO:0005515
Amo10g2042 381 Gene3D SET domain 152 381 IPR046341 -
Amo10g2042 381 SUPERFAMILY FYVE/PHD zinc finger 53 116 IPR011011 -
Amo10g2042 381 SMART PHD_3 64 110 IPR001965 -
Amo10g2042 381 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR5 8 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2042 Amo-Chr10 73541085 73544593 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2042 36 151 C2H2 Transcription Factor Family AT3G01460 33.051 1.31e-09 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Amo10g2042 SET 1.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2042 K24406 - tcc:18611813 569.311