Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2038 ATGAAGAGAAAACCTCATAAACCCGTSATATTGAGCTTCTTGTTCCCAATAACGAGATCCACCATTCTCATCCTCTCCATGGCTTCCCTCCTCTCCCTCTCGCTCTGCATCTTCCTCTCCCTCTTTCTTTCATCCTCCAACGCCCAACTTACCCCCTCCCTCCCTGTCCTTCAAGCATGCAAGGCCACGCGCTTCCCTCTCATATGCCACACCACGCTCAGTTCCYTGACCCAAACAAATCCTGACCCAACCCCAGTCGAGCTCGTCCAYTCCGCCATTAATTCWTCCTACACCAAACTCCACGATGCCATCACCATGATCTCCTCCCTCTACGAGGACTCCATCGCCAGCAACCGCACCCGCGCCACCGCGGCCAAGACCTGCATTCAGATCCTCCGCTACTCCCGCCGCCGCACTTTCCTCGCCGCCGACGCCYTCCCCCGGAATGCCACAAAAGACGCCCGCGCATGGCTCAGCGCCTCCTTGGCCTACCAGTACGGTTGCTGGTCCAGCCTCAAGTATGCCAACGACACCCTCTCCGTCGCGGAGGCGATGGTTTTTGTAGATTCCCTTACCTACATCACCAGCAACGCCCTCAGCATGGTCGCATCCTACGACCTCTTCGGCAACGACACCGCTTCATGGAGGCCGCCGTTAACGGAGCGTAACGGCTTCTGGGAGCCACCGGTCGCTTCGGGAGGGTTCGGATCGGGATATAAATTAGGAGTGCCGTCGAAATTGACGCCAGACGCTACCGTTTGCAAGAACGGGGATGGTTGTTACAGGACGGTGCAGGAGGCGGTTCACGCGGCGCCGGATAACCTTAAGGTCGGAGAACGGATGTTCGTGATTTACATAAAGGAAGGGGTATATGAAGAGAAGGTCAGGGTTCCGCCGAAGAAGAAGAATGTGGTGTTCTTGGGCGATGGAATGGGCAAAACCATCATCACCGGTTCCCGCAGCGTTGGGCTTATGCCTGGAATGTCAACCTATCACTCAGCCACCGTCGGGGTTCTTGGGGATGGATTCATGGCCAAGGATCTCACCATCCAGAACACGGCTGGTGCTGARGCGCACCAGGCGGTGGCCTTCCGATCGGACAGTGATCTTTCCGTCATTGAGAATTGRGAGTTCATTGGCAACCAYGACACACTKTATGCTCAAACCRTGCGCCAGTTTTACAAAAATTGCCGGATCATTGGCAATGTGGATTTCATCTTCGGAAARTCGGCGTCAATCTTCCAAGACTGRGAAATCCTGGTCAAGCCGAGGATAGTCGATCCGGAGAAGGGAGAGACCAATGCCATCACGGCACAGGGCAGGACGGACCCTGGTCAGTCGACCGGCTTTGTTTTCTGGAARTGCTCGTTTAATGGCACTGAGGAATATATGGCATTGTATCACAGCAAGCCTCAAGCACACAAGAACTATCTAGGTAGGCCATGGAAGGAGTATGCTAGGACAGTATTCATTKATTCAACCTTGGAAGCCCTGATTGCACCGGAGGGTTGGATGCCTTGGAGCGGGGACTTTGCGCTGTTGACGCTATACTATGGAGAATTCGAGAACTCAGGACCCGGTTCGYATTTGGCTAAAAGAGTTCCATGGAGCAGCAGGATCCCCAGTGAGCATGTGGATACTTACTCAGCTCAGAATTTCATTCAAGGAACTCATTGGATTCCGTCATCTCTGTGA 1695 0.5357 MKRKPHKPVILSFLFPITRSTILILSMASLLSLSLCIFLSLFLSSSNAQLTPSLPVLQACKATRFPLICHTTLSSLTQTNPDPTPVELVHSAINSSYTKLHDAITMISSLYEDSIASNRTRATAAKTCIQILRYSRRRTFLAADAXPRNATKDARAWLSASLAYQYGCWSSLKYANDTLSVAEAMVFVDSLTYITSNALSMVASYDLFGNDTASWRPPLTERNGFWEPPVASGGFGSGYKLGVPSKLTPDATVCKNGDGCYRTVQEAVHAAPDNLKVGERMFVIYIKEGVYEEKVRVPPKKKNVVFLGDGMGKTIITGSRSVGLMPGMSTYHSATVGVLGDGFMAKDLTIQNTAGAEAHQAVAFRSDSDLSVIENXEFIGNHDTLYAQTXRQFYKNCRIIGNVDFIFGKSASIFQDXEILVKPRIVDPEKGETNAITAQGRTDPGQSTGFVFWKCSFNGTEEYMALYHSKPQAHKNYLGRPWKEYARTVFIXSTLEALIAPEGWMPWSGDFALLTLYYGEFENSGPGSXLAKRVPWSSRIPSEHVDTYSAQNFIQGTHWIPSSL* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2038 564 Pfam Plant invertase/pectin methylesterase inhibitor 58 201 IPR006501 GO:0004857
Amo10g2038 564 SMART PMEI_2 51 201 IPR006501 GO:0004857
Amo10g2038 564 Gene3D Invertase/pectin methylesterase inhibitor family protein 55 205 IPR035513 -
Amo10g2038 564 PANTHER PECTINESTERASE 38 562 - -
Amo10g2038 564 CDD PMEI-like_3 59 206 - -
Amo10g2038 564 Pfam Pectinesterase 250 556 IPR000070 GO:0030599|GO:0042545
Amo10g2038 564 Gene3D - 244 564 IPR012334 -
Amo10g2038 564 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 38 562 - -
Amo10g2038 564 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 58 202 IPR035513 -
Amo10g2038 564 SUPERFAMILY Pectin lyase-like 248 562 IPR011050 -
Amo10g2038 564 TIGRFAM PME_inhib: pectinesterase inhibitor domain 27 202 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2038 Amo-Chr10 73501903 73504152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2038 59 559 Carbohydrate Esterase AT5G09760 61.034 0.0 639
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2038 - - gmx:100802102 704.131
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo10g2038 10 73501903 73504152 Amo20g2332 20 108798265 108799654 hybridization