Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2021 ATGGCAAAACCTATACCCAAAATTGGTTCGCGTAAAAATGGACGTATTGGTTCACGTAAACATGCTCGTAAAATACCAAAGGGCGTTATTCATGTTCAAGCTAGTTTCAACAATACCATTGTCACTGTTACCGATGTACGGGGTCGGGTAATTTCGTGGTCCTCCACAGGTACTTGTGGATTCAAAGGTACGCGAAGGGGAACACCATTTGCCGCCCAAACTGCAGCAGGAAATGTTATTCGAACAGTAGCGAATCAAGGCATGCAACGAGCAGAAGTCATGATAAAGGGTCCCGGTCTCGGAAGAGATGCGGCATTAAGAGCTATTCGTAGAAGTGGCATACTCTTAAATTTTATACGAGATGTAACCCCTATGCCACATAATGGGTGTAGGTCCCCTAAAAAACGACGTGTGTAA 417 0.446 MAKPIPKIGSRKNGRIGSRKHARKIPKGVIHVQASFNNTIVTVTDVRGRVISWSSTGTCGFKGTRRGTPFAAQTAAGNVIRTVANQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFIRDVTPMPHNGCRSPKKRRV* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2021 138 PANTHER 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 1 137 IPR001971 GO:0003735|GO:0005840|GO:0006412
Amo10g2021 138 PANTHER 30S RIBOSOMAL PROTEIN S11, CHLOROPLASTIC 1 137 - -
Amo10g2021 138 Hamap 30S ribosomal protein S11 [rpsK]. 11 138 IPR001971 GO:0003735|GO:0005840|GO:0006412
Amo10g2021 138 TIGRFAM uS11_bact: ribosomal protein uS11 19 135 IPR019981 GO:0003735|GO:0005840|GO:0006412
Amo10g2021 138 Pfam Ribosomal protein S11 28 137 IPR001971 GO:0003735|GO:0005840|GO:0006412
Amo10g2021 138 PIRSF RPS11p_RPS11a_RPS14e_RPS11o 7 138 IPR001971 GO:0003735|GO:0005840|GO:0006412
Amo10g2021 138 ProSitePatterns Ribosomal protein S11 signature. 106 128 IPR018102 -
Amo10g2021 138 Gene3D Ribosomal protein S11 9 138 IPR036967 GO:0003735|GO:0005840|GO:0006412
Amo10g2021 138 MobiDBLite consensus disorder prediction 1 23 - -
Amo10g2021 138 SUPERFAMILY Translational machinery components 23 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2021 Amo-Chr10 73075942 73076408 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2021 28 128 Cytoplasmic Ribosomal Protein Gene Family AT3G52580 39.091 1.28e-15 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2021 K02948 - gmx:3989330 261.536