Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2007 CTCAGTTCCATGACCCAAACAAATCCTGACCCAACCCCAGTCGAGCTCGTCCAATCCGCCATTAATTCATCCTACACCAAACTCCACGATGCCATCACCATGATCTCCTCCCTCTACGAGGACTCCATCGCCAGCAACCGCACCCGCGCCACCGCGGCCAAGACCTGCATTCAGATCCTCCGCTACTCCCGCCGCCGCACTTTCCTCGCCGCCGACGCCATCCCCCGGAATGCCACAAAAGACGCCCGCGCATGGCTCAGCGCCTCCTTGGCCTACCAGTACGGTTGCTGGTCCAGCCTCAAGTACGCCAACGACACCCTCTCCGTCGCGGAGGCGATGGTTTTTGTAGATTCCCTTACCTACATCACCAGCAACGCCCTCAGCATGGTCGCATCCTACGACCTCTTCGGCAACGACACCGCTTCATGGAGGCCGCCGTTAACGGAGCGTAACGGCTTCTGGGAGCCACCGGTCGCTTCGGGAGGGTTCGGATCGGGATATAAATTAGGAGTGCCGTCGAAATTGACGCCAGACGCTACCGTTTGCAAGAACGGGGATGGTTGTTACAGGACGGTGCAGGAGGCGGTTCACGCGGCGCCGGATAACCTTAAGGTCGGAGAACGGATGTTCGTGATTTACATAAAGGAAGGGGTATATGAAGAGAAGGTCAGGGTTCCGCCGAAGAAGAAGAATGTGGTGTTCTTGGGCGATGGAATGGGCAAAACCATCATCACCGGTTCCCGCAGCGTTGGGCTTATGCCTGGAATGTCAACCTATCACTCAGCCACCGTCGGGGTTCTTGGGGATGGATTCATGGCCAAGGATCTCACCATCCAGAACACGGCTGGTGCTGACGCGCACCAGGCGGTGGCCTTCCGATCGGACAGTGATCTTTCCGTCATTGAGAATTGTGAGTTCATTGGCAACCAGGACACACTCTATGCTCAAACCCTGCGCCAGTTTTACAAAAATTGCCGGATCATTGGCAATGTGGATTTCATCTTCGGAAATTCGGCGTCAATCTTCCAAGACTGTGAAATCCTGGTCAAGCCGAGGATAGTCGATCCGGAGAAGGGAGAGACCAATGCCATCACGGCACAGGGCAGGACGGACCCTGGTCAGTCGACCGGCTTTGTTTTCTGGAACTGCTCGTTTAATGGCACTGAGGAATATATGGCATTGTATCACAGCAAGCCTCAAGCACACAAGAACTATCTAGGTAGGCCATGGAAGGAGTATGCTAGGACAGTATTCATTCATTCAACCTTGGAAGCCCTGATTGCACCGGAGGGTTGGATGCCTTGGAGCGGGGACTTTGCGCTGTTGACGCTATACTATGGAGAATTCGAGAACTCAGGACCCGGTTCGAATTTGGCTAAAAGAGTTCCATGGAGCAGCAGGATCCCCAGTGAGCATGTGGATACTTACTCAGCTCAGAATTTCATTCAAGGAACTCATTGGATTCCGTCATCTCTGTGA 1479 0.5429 LSSMTQTNPDPTPVELVQSAINSSYTKLHDAITMISSLYEDSIASNRTRATAAKTCIQILRYSRRRTFLAADAIPRNATKDARAWLSASLAYQYGCWSSLKYANDTLSVAEAMVFVDSLTYITSNALSMVASYDLFGNDTASWRPPLTERNGFWEPPVASGGFGSGYKLGVPSKLTPDATVCKNGDGCYRTVQEAVHAAPDNLKVGERMFVIYIKEGVYEEKVRVPPKKKNVVFLGDGMGKTIITGSRSVGLMPGMSTYHSATVGVLGDGFMAKDLTIQNTAGADAHQAVAFRSDSDLSVIENCEFIGNQDTLYAQTLRQFYKNCRIIGNVDFIFGNSASIFQDCEILVKPRIVDPEKGETNAITAQGRTDPGQSTGFVFWNCSFNGTEEYMALYHSKPQAHKNYLGRPWKEYARTVFIHSTLEALIAPEGWMPWSGDFALLTLYYGEFENSGPGSNLAKRVPWSSRIPSEHVDTYSAQNFIQGTHWIPSSL* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2007 492 CDD PMEI-like_3 1 134 - -
Amo10g2007 492 Gene3D - 172 492 IPR012334 -
Amo10g2007 492 Pfam Plant invertase/pectin methylesterase inhibitor 7 129 IPR006501 GO:0004857
Amo10g2007 492 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 133 IPR035513 -
Amo10g2007 492 SUPERFAMILY Pectin lyase-like 176 490 IPR011050 -
Amo10g2007 492 Pfam Pectinesterase 178 484 IPR000070 GO:0030599|GO:0042545
Amo10g2007 492 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 7 130 IPR035513 -
Amo10g2007 492 SMART PMEI_2 4 129 IPR006501 GO:0004857
Amo10g2007 492 PANTHER PECTINESTERASE 3 490 - -
Amo10g2007 492 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 3 490 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2007 Amo-Chr10 72824321 72825996 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2007 1 487 Carbohydrate Esterase AT5G09760 62.577 0.0 638
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2007 - - gmx:100802102 692.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo10g2007 10 72824321 72825996 Amo20g2533 20 119038297 119040722 hybridization