Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g1999 ATGGCATCGTCACTGGAGGAGCTTCTTGCCAAGGAAGGGTTCAAAGGAATCAGAAGAGTGGAAAGGACTAGATCATCCTTTCACGGTGGTGCTTTGACTGAGCCACGGAGACTCTCCCTATCGACTGAAGGAGTTACAAGGATCAGAACAAAGTCTGAGTCCTCTTCCTTTCAGGGTCAAAGCAGGAGGCCAAGGGATAAGCCCTTTCTTAGAGAGAAAATAATACATCAACGGTTGAACTATGAAGCTGCTCAGAAACCTTGTGACAACACAATTGAAGTTTCTAATAATGCAGAAAGAGGCAAAGAAATTCCTGCCATGACAAATAATAACTCAAGTCGCACAAGTTTTGAAGACAGAAACAACAAAAAGAATCAAGATCACTATATTCATTCGGCTTCTAATCTTGCTCTTGATCAAGTTGCTGTCCAAGCAGTAGTGTCCATTCTGAATGGATACATGAAACGTTTTCTAGGAGATGAGGACTTCCGGGCTACACTGCGTCATAATTGTTTCTCCTCTTTGAATTTCATTGAATTGAAAGAAGAGAACAATACTGAGACCAAAATCATAACAAGCCTTGAGCAAGCAATCGAGACCATTGAACAAACTGCAGAGCAGTCTGCACCTTCCACACATCTGAAAAGAGCCACAATGCAGTTAAGCATCATCACGGGCCTGAGTTTAAACGATTTGAAGCACGGTTGTACCTGTGGGATCCCGAATTATAAGTTGTCAGCCTGTGCTCATCTTTATCTCAGTGTGGTATATGTGATACAGAGAAAAAGCAAGGTATCTGCAAAGCATCTCTTGCAAGTGTTTTGTGATTCGCCTTATCAGGCGCGATCGATATTGTTGCCTGAACTGTGGGAGCAACTATTTTCCCCACAACTTACCCATTTGAAGGCATGGCACGACAAAGAAGCTGAGATTTTAGCAACCACACCAAACAGAACAAGGAAGACAAAGCTTCTTCAACAAGTGTATAATGAACATTTGGATTCTGCTACTCATATATTTGCTGTATACTACAAAGATTGGCTCACTGAAGGAGTTGAGTCTCCAGCTATTCCTTCCATTAGCATTCCATCAATATCTGTCGCAGCAAGTTCATTTGGTCATTCTTCAAACTCTGCTAGCTCCAACGAACCCTTCTCACCCCAGCCAATGATCAGCAAGAAACTTTATGATTCTGTCTTTGGTAGCTCCAGCAAAACCAAAGTTTATGACGCTCAGGATAACATAGAAATGTGTGTTTCAGGCTCTTATAGTTCTACTATTGTTAAACAAACGTTAACATATGAGTCTGAAACAACTAAATTTACAGATCAGGATATTGAAGATTTCGCTCTCGGTTTACCAATTGAAGCACTCCATCAGAAAGGAACTCAAGTTACAACAGCAGAAGAATTAAAGGAAAGGGGTATCAGCAATAACATTGACAAACCCTTCTCCACACAAACCTATTTAGACAGCCACATAGTGGATGCTCTATCATTTGGTAAGGAAGATGAACTTACTCTCATAAGGCCAAACAAGATGAGGTCTGCTCTTGCAGCATTATGTTCTCCAAGCATTCCAGACGAATTTATTTGTCCTCTTACGGGAACTGTCTTTGAGGAACCAGTCACCCTGGAGACTGGTCAAACCTTTGAAAGAGAAGCCATCAAGGCGTGGTTTGAGAAGGGAAACAGAACATGTCCGGTAACTGGAAATACTTTAGAATTTGTGGCTATGCCGCTTACCAACCTTATTTTGAAGCGTGTGATTGATAAATGGAAGTCAGAAAGTTTGGATCACCTTCTAAATCTTGCTTCTCAAACAGTGGGAAACTCAAAGGAATTTAATTCAAGAAATGATGAGGTTGCTGTTTTCAAATTGGAGAGTTTCCTGTCTTCTTTCAATGATGAGGAGAAAAGAACTTATGCCAAGTATCTCATCTCTTTAGGAGTTCTATCATTTCTTTTTAGGAGGTTTGAACTGGGAAATTTGGAGGAAAAATCACGTGTGGTGGCACTCTTGTTAATTTGTATTGTATCAGAATCTCGCTGCATATATCGGATAGCAGAAAATATCAACAGAAAATGTCTTCTTGAGCTTCTTCACAGCAAGGAGGATACTCCATTAACAAATGCAATATTATTGCTTACTGAACTTTCATCCATGAAGAGGAGAAAGGATGTTACATCATTCATTAGTGACTTGGTGGGTGAAGATGTTTTTAAAACACTTGGCATTCTACTCAAGTATCTTAACAAATCTACTTCACAAGAAAAGTCCCTAACCGCCGTTCTGTTGCTGCACTTTGATCTACTGGTTGAGCCTCAAAAGTTTAGCATATACAGAGAGGTGGCAGTGAATGTCATTACGGCAGCACTTGATGCCAGCTTAAATGATGAGAAGGCCCGAGCGGAGTGTTGCAGAGCACTTCTAGTTTTGTGTGGGCACTTTTCCTCTGATGGGAGGATACTGACAAAGACTAGAACCTTTGAAGAAGCAGATTGCAATATCAACACATCGGAAGTAAGACTTCAAGGCCATGAAGAAGAGGGTCTACTGTGGGATCATGCAGCCACTTTGTCTATGAAGGAAGCAATGGTAGAAGAGTTGTTAATGAAGTTGATAGAATCACTAGTTGGAAATGGAGAAAGCCCATTTTTGACCAACTATTGTAGATGCCTAGATTCTAGACACCTAGATTTGGTGAGGGAGTGTCTAGTAACGGTTAAATGGTTGAGCTCCTCACTCTCCAAGCTAATGAATGTGGGATTTCATCTTCCTGCCTTCTTAGCCCTCATCTCTCAGTTGAAAGGAATCTTGGAAAATGGAGAACTTGAGCTCAAGACTCTTGCGTCAGTGTCCTTGCTTAATTTCAAATGCAGAACTCTGTTGAAGACAATGGCAGAAGATATTGCACCCCTTCTTCATAGGCTTGTCGATGTAACATGGACTGCTAAGCAGCTGCATGCCATTGTGTCTGGGGGGAATCTGTAG 2994 0.4125 MASSLEELLAKEGFKGIRRVERTRSSFHGGALTEPRRLSLSTEGVTRIRTKSESSSFQGQSRRPRDKPFLREKIIHQRLNYEAAQKPCDNTIEVSNNAERGKEIPAMTNNNSSRTSFEDRNNKKNQDHYIHSASNLALDQVAVQAVVSILNGYMKRFLGDEDFRATLRHNCFSSLNFIELKEENNTETKIITSLEQAIETIEQTAEQSAPSTHLKRATMQLSIITGLSLNDLKHGCTCGIPNYKLSACAHLYLSVVYVIQRKSKVSAKHLLQVFCDSPYQARSILLPELWEQLFSPQLTHLKAWHDKEAEILATTPNRTRKTKLLQQVYNEHLDSATHIFAVYYKDWLTEGVESPAIPSISIPSISVAASSFGHSSNSASSNEPFSPQPMISKKLYDSVFGSSSKTKVYDAQDNIEMCVSGSYSSTIVKQTLTYESETTKFTDQDIEDFALGLPIEALHQKGTQVTTAEELKERGISNNIDKPFSTQTYLDSHIVDALSFGKEDELTLIRPNKMRSALAALCSPSIPDEFICPLTGTVFEEPVTLETGQTFEREAIKAWFEKGNRTCPVTGNTLEFVAMPLTNLILKRVIDKWKSESLDHLLNLASQTVGNSKEFNSRNDEVAVFKLESFLSSFNDEEKRTYAKYLISLGVLSFLFRRFELGNLEEKSRVVALLLICIVSESRCIYRIAENINRKCLLELLHSKEDTPLTNAILLLTELSSMKRRKDVTSFISDLVGEDVFKTLGILLKYLNKSTSQEKSLTAVLLLHFDLLVEPQKFSIYREVAVNVITAALDASLNDEKARAECCRALLVLCGHFSSDGRILTKTRTFEEADCNINTSEVRLQGHEEEGLLWDHAATLSMKEAMVEELLMKLIESLVGNGESPFLTNYCRCLDSRHLDLVRECLVTVKWLSSSLSKLMNVGFHLPAFLALISQLKGILENGELELKTLASVSLLNFKCRTLLKTMAEDIAPLLHRLVDVTWTAKQLHAIVSGGNL* 998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g1999 997 MobiDBLite consensus disorder prediction 39 62 - -
Amo10g1999 997 SUPERFAMILY ARM repeat 585 918 IPR016024 -
Amo10g1999 997 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 525 599 IPR013083 -
Amo10g1999 997 SUPERFAMILY RING/U-box 524 596 - -
Amo10g1999 997 PANTHER OS04G0584500 PROTEIN 1 994 - -
Amo10g1999 997 Pfam U-box domain 526 596 IPR003613 GO:0004842|GO:0016567
Amo10g1999 997 MobiDBLite consensus disorder prediction 98 121 - -
Amo10g1999 997 MobiDBLite consensus disorder prediction 98 116 - -
Amo10g1999 997 PANTHER OS04G0584500 PROTEIN 1 994 - -
Amo10g1999 997 SMART Ubox_2 529 593 IPR003613 GO:0004842|GO:0016567
Amo10g1999 997 MobiDBLite consensus disorder prediction 26 69 - -
Amo10g1999 997 Coils Coil 830 850 - -
Amo10g1999 997 CDD RING-Ubox_PUB 530 571 IPR045210 -
Amo10g1999 997 ProSiteProfiles U-box domain profile. 525 600 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g1999 Amo-Chr10 72361390 72365345 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g1999 526 641 U-box Gene Family AT5G42340 32.759 3.46e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g1999 - - gmx:100820501 1197.19