Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g1996 ATGCCGGAGCTTCGTAGTGGACCGCGGCGTGGTCGTGCTCAGGTAGGCCGTAGAATCGCTGAACCACCGTCTCCGGCGGCCAACTACGTGAAGACTCGAGCTGCGGTCGCCAGGGCGGCTGCGGCAGCGGCGACGGTGGCCGAGGAGAGGCCCAGGACCCGCTTGGCGGCGAAGAAGTTGGAGCAGGAGGAGAAGCCAGTGATTGTGATATCGGAAGAGGAGGCCGAGAGCGACGTAGAGCGCGCGAAGAATAAGAAGAGCGAAGAGCGGATTGAAGTCGGCGTTCAAGTGGGAGGATCACCTGTCTACAAGGTGGATAGGAAGCTGGGCAAAGGTGGCTTTGGTCAAGTCTTTGTTGGCCGTCGAGTTACCGGGGGTAATGATCGTACTAGTGGCCCTGGGGCTACTGAGGTGGCTCTAAAATTTGAACATAGGAATAGTAAAGGCTGTAATTATGGCCCTCCTTATGAGTGGCAAGTTTACAACACCCTTGGTGGCAGTCATGGAATACCAAAGGTACACTATAAAGGAAGACAAGGAGAATATTATGTAATGGTTATGGACATGCTTGGTCCAAGCTTGTGGGATGTGTGGAACTCTTCAAGCCAGGCGATGCCTGCAGAAATGGTTGCATGTATAGCTGTTGAGTCCTTGTCAATCCTGGAGAAAATGCATTCAAGAGGATATGTGCATGGAGATGTAAAGCCAGAGAACTTTTTACTAGGCCAGCCAGGGACACCACAAGAGAAGAAATTGTACCTTGTTGACCTTGGATTAGCAACAAAGTGGAGAGACACCTCCAGTGGGCAGCATGTTGAATATGATCAACGTCCAGATATGTTTAGAGGGACTGTTCGATATGCAAGTGTTCATGCTCACTTGGGAAGAACTGCTAGTAGAAGGGATGATCTTGAATCTCTGGCATATACACTCATCTTCCTTCATAAAGGGCGGTTACCATGGCAAGGTTATCAGGGTGATAACAAGTCCTTCCTTGTTTGCAAAAAGAAGATGGGAACATCTCCAGAGATGCTCTGTTGCTTCTGCCCTCCTCCTTTTAGGCAATTTCTTGAGATTGTAGTGAACATGAAATTTGATGAAGAACCAAACTATTCCAAGCTAATCTCTCTTTTTGATGGTATGCTTGGTCCAAATCCTGCATTGCGGCCGATTAACACTGAAGGTGCTCAAAAGGTTGGGCAAAAGCGGGGTAGATTGAATATTGAGGACGAGGATGATTCACAACCCAAAAAGAAGGTTCGTTTGGGGGTTCCTGCTACACAATGGATTTCAGTTTACAATGCCAGACTACCAATGAAACAAAGGTATCACTATAATGTAGCTGATGCAAGACTAGCACAGCATGTTGAGAGAGGGATTGCAGATGGCCTTCTTATTAGTTGTGTTGCATCTTGTTCCAATCTCTGGGCGCTTATTATGGATGCTGGAACTGGTTTTACAACTCAAGTTTACAAGTTGTCACCATTTTTCTTGCACAAGGAATGGATTATGGAGCAGTGGGAAAAGAACTATTATATTACTTCAATAGCTGGCGCTAATAATGGAAGCTCTCTTGTGGTGATGTCAAAAGGCACGCAGTACACACAACAATCATACAAAGTAAGTGATTCTTTCCCCTTCAAATGGATAAACAAGAAGTGGAGAGAAGGTTTTCATGTCACCTCGATGGCCACTGCCGGAAGTCGCTGGGGTGTTGTTATGTCTAGAAATGCTGGATTCAGTGATCAGGTTGTTGAGCTTGATTTTCTCTATCCTAGTGAGGGCATCCACAGACGATGGGATAATGGTTACAGGATTACAGCAACTGCTGCTACATGGGATCAATCTGCTCTTATATTAAGTATTCCAAGGCGCAGGCCAGGTGATGAAACTCAGGAAACACTACGCACATCTCAATTTCCCAGCACACACGTTAAGGAAAAATGGTCAAAGAACCTTTATCTTGCTTGTTTGTGCTATGGGCGCACTGTATGCTGA 1998 0.4665 MPELRSGPRRGRAQVGRRIAEPPSPAANYVKTRAAVARAAAAAATVAEERPRTRLAAKKLEQEEKPVIVISEEEAESDVERAKNKKSEERIEVGVQVGGSPVYKVDRKLGKGGFGQVFVGRRVTGGNDRTSGPGATEVALKFEHRNSKGCNYGPPYEWQVYNTLGGSHGIPKVHYKGRQGEYYVMVMDMLGPSLWDVWNSSSQAMPAEMVACIAVESLSILEKMHSRGYVHGDVKPENFLLGQPGTPQEKKLYLVDLGLATKWRDTSSGQHVEYDQRPDMFRGTVRYASVHAHLGRTASRRDDLESLAYTLIFLHKGRLPWQGYQGDNKSFLVCKKKMGTSPEMLCCFCPPPFRQFLEIVVNMKFDEEPNYSKLISLFDGMLGPNPALRPINTEGAQKVGQKRGRLNIEDEDDSQPKKKVRLGVPATQWISVYNARLPMKQRYHYNVADARLAQHVERGIADGLLISCVASCSNLWALIMDAGTGFTTQVYKLSPFFLHKEWIMEQWEKNYYITSIAGANNGSSLVVMSKGTQYTQQSYKVSDSFPFKWINKKWREGFHVTSMATAGSRWGVVMSRNAGFSDQVVELDFLYPSEGIHRRWDNGYRITATAATWDQSALILSIPRRRPGDETQETLRTSQFPSTHVKEKWSKNLYLACLCYGRTVC* 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g1996 665 PANTHER CASEIN KINASE-RELATED 94 636 - -
Amo10g1996 665 SMART serkin_6 103 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo10g1996 665 ProSitePatterns Protein kinases ATP-binding region signature. 109 141 IPR017441 GO:0005524
Amo10g1996 665 Pfam Protein kinase domain 103 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo10g1996 665 Gene3D Transferase(Phosphotransferase) domain 1 67 422 - -
Amo10g1996 665 ProSiteProfiles Protein kinase domain profile. 103 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo10g1996 665 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672|GO:0006468
Amo10g1996 665 CDD STKc_CK1 103 378 - -
Amo10g1996 665 Coils Coil 70 92 - -
Amo10g1996 665 MobiDBLite consensus disorder prediction 1 26 - -
Amo10g1996 665 SUPERFAMILY Protein kinase-like (PK-like) 103 386 IPR011009 -
Amo10g1996 665 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 94 636 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g1996 Amo-Chr10 72331319 72336346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g1996 89 260 EF-hand Containing Proteins AT4G36070 27.778 2.35e-07 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Amo10g1996 Pkinase 1.8e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g1996 - - gmx:100819969 1213.36