Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g1976 ATGGAAAACTCAACCTTACCGGAAAATAGCATAGAGAACAGGAAGGTGGCGGTAGCAGCGGCGGAAGGCGACAGCGTATCGTCCGATGGTTTGAAAGGCGAAGATGGTGAGCGGAACTCAAGCGGCGCGAACCGGTGGCCGCGAGAAGAGACAATGGCTTTGATAAAAATTAGGTCTGAAATGGACGGCGCCTTCAGAGACATCAGCCCCAAAGCCCCTCTTTGGGAACAAGTCTCAAGGAAATTAGGTGAGCTGGGATATGAAAGGAGTGCGAAGAAGTGTAAAGAGAAGTTTGAGAATATTTACAAGTACCATAGGAGGACCAAGGAAGGCCGTTCCGGAAAGCGTAACGGAAAAACTTACCGTTTCTTTGATCAACTAGAAGCATTAGACCCGCACCCTAACAATAACGCCGTTATTCAAGATGCGGTTCCATGTTCCGTTAGGTTTCCGGTTACTGCAATGGAGCATTCCAGCTCCGCCACTTCGTCTTACTCGAGCGGCGGGGGTGAAGACGAAGGTGAAGGGAGGAGGAGGAAGAAGAAGAGGAGGCTGAGGCTGTTCTTTGAGGGGCTTATGAGGGAGGTTTTGGAGAAGCAAGAGAGCCTGCAGAGGAAGTTCATGGAAGTTCTCGATAAGTGCGACCAGGATCGAATGGCGAGGGAGCAAGCATGGAAGACGGAGGAGCTTGCCAGGATCAAGAAGGAGCGCGAGCTTCTCGCTCAGGAACGGTCGATTGCCGCCGCCAAGGACGAAGCGGTTATGTCCTTCATAAGAAAGTTTGCAGAAAACAGCAACAACAATGGCGCGCTGCAATTTCCAGCTGATAATAATAACCACCTCCAGGAGCAGGAGAAGGAGAAGGAGAAGGAGAAAGACGAAGTTGGGAATGGCATCAATGTTGGGAATTTTGTGCACATGAGCTCTTCGCGGTGGCCGAAGGATGAAGTAGAGGCATTGATAAGGCTGAGGACACAAGTGGATGAGCAGTTACAGCAGCAGCAAGGGAACAAGGGACCGCTTTGGGAGGAGGTGTCTACGGCCATGAAGGGACTCGGATACGATCGGAGCGCAAAGAGGTGCAAGGAGAAGTGGGAGAACATCAACAAGTACTTCAAGAGAATGAAGGAGAAGAACAAGAGGAAGCCCGAGGACTCTAAAACATGTCCCTATTATCACCATCTTGAGGCCATATACAGCAAGAAGCCCAAGAACAATAACAAGCTTGATGATAATGATAATGACAAGAAGAACGAGTTGAAGCCTGAAGAGCTTTTGATGCATATCATGAATGGTCAAGAAGAGAGGCAGCAGGATCGAGATCAAGATCAGTCTTCATCTGAAGATGCAGACAGAGACAACCATAATGGATATCAGATGCTTGATAATAGTCCTTCTTCCATAGCAATCATGAGTTAA 1419 0.4884 MENSTLPENSIENRKVAVAAAEGDSVSSDGLKGEDGERNSSGANRWPREETMALIKIRSEMDGAFRDISPKAPLWEQVSRKLGELGYERSAKKCKEKFENIYKYHRRTKEGRSGKRNGKTYRFFDQLEALDPHPNNNAVIQDAVPCSVRFPVTAMEHSSSATSSYSSGGGEDEGEGRRRKKKRRLRLFFEGLMREVLEKQESLQRKFMEVLDKCDQDRMAREQAWKTEELARIKKERELLAQERSIAAAKDEAVMSFIRKFAENSNNNGALQFPADNNNHLQEQEKEKEKEKDEVGNGINVGNFVHMSSSRWPKDEVEALIRLRTQVDEQLQQQQGNKGPLWEEVSTAMKGLGYDRSAKRCKEKWENINKYFKRMKEKNKRKPEDSKTCPYYHHLEAIYSKKPKNNNKLDDNDNDKKNELKPEELLMHIMNGQEERQQDRDQDQSSSEDADRDNHNGYQMLDNSPSSIAIMS* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g1976 472 Gene3D - 46 107 - -
Amo10g1976 472 Gene3D - 312 374 - -
Amo10g1976 472 MobiDBLite consensus disorder prediction 28 44 - -
Amo10g1976 472 CDD GT1 44 109 - -
Amo10g1976 472 ProSiteProfiles Myb-like domain profile. 38 102 IPR001005 -
Amo10g1976 472 MobiDBLite consensus disorder prediction 399 472 - -
Amo10g1976 472 CDD GT1 310 376 - -
Amo10g1976 472 ProSiteProfiles Myb-like domain profile. 310 369 IPR001005 -
Amo10g1976 472 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2-LIKE 1 471 - -
Amo10g1976 472 Pfam Myb/SANT-like DNA-binding domain 310 398 IPR044822 -
Amo10g1976 472 Pfam Myb/SANT-like DNA-binding domain 44 130 IPR044822 -
Amo10g1976 472 PANTHER - 1 471 - -
Amo10g1976 472 MobiDBLite consensus disorder prediction 18 49 - -
Amo10g1976 472 Coils Coil 232 252 - -
Amo10g1976 472 SMART sant 42 104 IPR001005 -
Amo10g1976 472 SMART sant 308 371 IPR001005 -
Amo10g1976 472 MobiDBLite consensus disorder prediction 157 180 - -
Amo10g1976 472 MobiDBLite consensus disorder prediction 399 456 - -
Amo10g1976 472 MobiDBLite consensus disorder prediction 457 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g1976 Amo-Chr10 71580540 71582793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g1976 179 405 Trihelix Transcription Factor Family AT1G76890 46.091 5.28e-65 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Amo10g1976 Myb_DNA-bind_4 2.3e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g1976 - - aip:107623117 822.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo10g1976 10 71580540 71582793 Amo20g2491 20 116360831 116364089 hybridization