Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g1965 ATGGGTGAAGTTAAGCCATATTTGGCAGTGGTTCTAATGCAATTCATATATTCAGTGATGACCTTGTTGACTAAGGCAGTTTTTAACCAAGGCATGAATAGCTCTGTGTTTATCTTCTATAGACAAATGTTGGGAACCGTTATTTTGGTCCCTCTGGCCTTCATATTTGAACGAAAAAGTGCAGTGCCACTCTCGTTCATGACTTTCTTGAAGATTTTCATGTTCTCATTTATCGGGCTTACTCTAACCTTGAATGTTTATAGCATTGCACTTGTTTATACCTCTGCCACGTTGGGTGCTGCATTTGTTAATTGCCTCCCCGCTTCTACTTTCTTCCTTGCTGTCATTCTCAGAATGGAAAAGGTAAATATAAAGACAGAATCAGGGATTGCAAAGATTGCAAGTGTATTGCTTTGCATAGGTGGTGTGGTGATCCTTGCATTATACAAAGGACCACACTTAGTATCTGGACACCACCACACTCAACATCTTTCATCAAGAGGCCAAAAATGGATACTCGGTTCTTTACTCTTTTTCTTGGCAGTCATCACTTGGAGCTTTTGGCTTGTCATTCAGGCTCAATTTCTTAAAAGCTACCCTTCAAAGTTATATTTCACTAGCCTGCAGTGCATGTCAAGTGCAATTCAATCATTTTTGGTTGCTATAGCTTTTGAAAGAGATTTTCAGCAATGGAAGTTGGGTTGGGATATGAGACTCCTTGCAGTTGTCTACACTGGGATACTGGTGAATGGGGTGGTATACTACTTGCAAGCTTGGGTGATAGAAAAGAGAGGGCCTGTTTTCTCAATAATATGGAACCCACTCAGTTTTATTATGTCTACCACTGGTTCTATATTGCTCTTGGGTGAGCCCCTGTGTTTAGGCAGTGTTGTGGGTGGGATCATGCTGGTTCTAAGTCTCTATAGTGTTTTGTGGGCAAAAAGCAAAGAAGGAGTGAGTCATCAGAAATCACTGCCGGTTAAAGCACCAAAAGAATGTGGAGATACCAAAATAACAGAGGCAAGCGATGCACAACCACATCCACAGCAACAAATATAG 1059 0.4108 MGEVKPYLAVVLMQFIYSVMTLLTKAVFNQGMNSSVFIFYRQMLGTVILVPLAFIFERKSAVPLSFMTFLKIFMFSFIGLTLTLNVYSIALVYTSATLGAAFVNCLPASTFFLAVILRMEKVNIKTESGIAKIASVLLCIGGVVILALYKGPHLVSGHHHTQHLSSRGQKWILGSLLFFLAVITWSFWLVIQAQFLKSYPSKLYFTSLQCMSSAIQSFLVAIAFERDFQQWKLGWDMRLLAVVYTGILVNGVVYYLQAWVIEKRGPVFSIIWNPLSFIMSTTGSILLLGEPLCLGSVVGGIMLVLSLYSVLWAKSKEGVSHQKSLPVKAPKECGDTKITEASDAQPHPQQQI* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g1965 352 PANTHER WAT1-RELATED PROTEIN 5 326 IPR030184 GO:0016021|GO:0022857
Amo10g1965 352 Pfam EamA-like transporter family 173 311 IPR000620 GO:0016020|GO:0016021
Amo10g1965 352 Pfam EamA-like transporter family 6 133 IPR000620 GO:0016020|GO:0016021
Amo10g1965 352 SUPERFAMILY Multidrug resistance efflux transporter EmrE 40 151 - -
Amo10g1965 352 PANTHER WAT1-RELATED PROTEIN 5 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g1965 Amo-Chr10 71217347 71221403 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g1965 1 244 Nodulin-like Gene Family AT5G64700 52.529 1.84e-84 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g1965 - - vun:114162763 448.743
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3965 13 132031517 132034132 Amo10g1965 10 71217347 71221403 PCT
Amo10g1965 10 71217347 71221403 Amo13g3965 13 132031517 132034132 PCT