Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g1935 ATGGAGTTCGACGAGTATGACTACTTGGAGAAGACGGTGGAGGACCATGACGACAGAGATTCGTCTAAGAAGACCAAAAAAGACAGCTCCGAGAAAACCTACCGGAAGCGCGACGAGCTCGACGACGATCTAGACGCTGCCGCCTACGACGGGCGCATCAAGAAATCCAGGGCCGAGGAAGAGAACGGCTCCAGGAAGGATCGGGATGGCCGCGATAGGGAGCGGTCTTCCCGCGACAAGGACCGCCACAGGCACCGCAGCAGCGACAGGGAAAGAGACGGTGAGCGGAGCAGCAGAGACAGAGATAGAGACAGTGAGAGGAGCAGCAGGGACAGAGAGAGGGAGAGGGAGAAAAGCAAAGAGAGGGATAGGAGGGAGAGGGACAAAGAGAGGGAGAAGAGAGAAAGGGATAGAGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAAAGGGAAAGAGAGAGAAAGGACAGGGAGAGGGACAGAGAACGAGAGGAGGGGTCCAGGAGGAGCAGGTCTCGTTCCGAGCGAGACAGAGACAGAGAGAGGGAACGTGATTTTGACTCGAGAGATGGCCGGAGACAGAGGGAAAAGAAAGAAGCTGCAGAGCCTGAGGCAGATCCCGAAAGGGATCAGCGAACTGTTTTTGCCTACCAGATGCCTTTGAAGGCAACAGAGAGGGATGTTTATGAGTTCTTCTCTAAAGCTGGCAAGGTGAGGGATGTTCGTCTTATCATGGATAGGAACTCAAGAAGATCTAAAGGAGTTGGGTATATTGAATTTTATGATGTGATGTCAGTGCCAATGGCAATTGCTCTCTCTGGCCAACTTCTCCTTGGACAGCCTGTGATGGTTAAACCTTCTGAGGCTGAAAAGAACCTTGTTCAATCTAATACTACTAGTGGAGCTGCTGGTGTAGCAGGACCATATGGAGCTGTAGACAGGAAACTGTATGTAGGGAACCTTCACTTCAACATGACCGAGAGTCAACTGAGAGAGATTTTTGAGCCATTTGGTCCAGTGGAGCTTGTACAATTGCCACTTGATCTGGAAACTGGACATTGCAAGGGTTTTGGGTTTGTTCAATTTGCTCATCTTGAGCATTCCAAGGCAGCTCTGAGTTTAAATGGAAAACTGGAAATTGCTGGCAGGACTATCAAGGTCTCATCTGTAACTGATCATGTTGGAAGCCAAGATACAACTGCGAAATCTGCAGACTTCGATGATGATGAAGGTGGATTGGCTTTAAACGCTCAATCAAGAGCTTTACTTATGCAGAAGCTGGATCGCTCTGGCATTGCTGCTAGCATTGGCGTTCCACCAGTTGTGAATGGGTCGGCCCCTGCACAGCAAGCTGTTAGCTTGCCTATTGGTAATCCAGGCATAATACCAGCACCAACTCTCCCAACACAACTTATGACTAACCCAGTTGCCGAGCCTGTTGGAACCCCCAGCGAGTGTTTACTGTTGAAGAATATGTTTGATCCGGCCACTGAGACAGAACCAGATTTTGATTTAGACATTAAAGAGGATGTAGAAGAAGAGTGTTCTAAGTATGGGCGGGTGAAGCATATCTCTGTTGACAAAAACAGTGCAGGTTTTGTGTATTTGCAGTTTGAAACAGTGGAAGCAGCAAGTGCCGCTCAACGTGCATTGCACCTGAGGTGGTTTGCACGTAGATTGATTTCAGCTTTGTTCATGCAACCTCAGATGTATGAAGAGAAGTTTAAAGGGGAGGTTTGA 1740 0.4891 MEFDEYDYLEKTVEDHDDRDSSKKTKKDSSEKTYRKRDELDDDLDAAAYDGRIKKSRAEEENGSRKDRDGRDRERSSRDKDRHRHRSSDRERDGERSSRDRDRDSERSSRDREREREKSKERDRRERDKEREKRERDREKEKEKEKEKERERERKDRERDREREEGSRRSRSRSERDRDRERERDFDSRDGRRQREKKEAAEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTSGAAGVAGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVELVQLPLDLETGHCKGFGFVQFAHLEHSKAALSLNGKLEIAGRTIKVSSVTDHVGSQDTTAKSADFDDDEGGLALNAQSRALLMQKLDRSGIAASIGVPPVVNGSAPAQQAVSLPIGNPGIIPAPTLPTQLMTNPVAEPVGTPSECLLLKNMFDPATETEPDFDLDIKEDVEEECSKYGRVKHISVDKNSAGFVYLQFETVEAASAAQRALHLRWFARRLISALFMQPQMYEEKFKGEV* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g1935 579 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 212 289 IPR000504 GO:0003723
Amo10g1935 579 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 314 392 IPR000504 GO:0003723
Amo10g1935 579 MobiDBLite consensus disorder prediction 1 212 - -
Amo10g1935 579 MobiDBLite consensus disorder prediction 9 211 - -
Amo10g1935 579 CDD RRM1_RBM39_like 213 285 - -
Amo10g1935 579 SUPERFAMILY RNA-binding domain, RBD 480 567 IPR035979 GO:0003676
Amo10g1935 579 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 577 - -
Amo10g1935 579 Gene3D - 480 578 IPR012677 -
Amo10g1935 579 Coils Coil 120 165 - -
Amo10g1935 579 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 508 560 IPR000504 GO:0003723
Amo10g1935 579 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 219 281 IPR000504 GO:0003723
Amo10g1935 579 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 316 386 IPR000504 GO:0003723
Amo10g1935 579 PANTHER CC1-LIKE SPLICING FACTOR 1 577 - -
Amo10g1935 579 SUPERFAMILY RNA-binding domain, RBD 313 391 IPR035979 GO:0003676
Amo10g1935 579 Gene3D - 311 406 IPR012677 -
Amo10g1935 579 CDD RRM2_RBM23_RBM39 316 388 - -
Amo10g1935 579 TIGRFAM SF-CC1: splicing factor, CC1-like family 77 575 IPR006509 GO:0003723|GO:0005634|GO:0006397
Amo10g1935 579 SMART rrm1_1 315 388 IPR000504 GO:0003723
Amo10g1935 579 SMART rrm1_1 213 285 IPR000504 GO:0003723
Amo10g1935 579 SMART rrm1_1 486 563 IPR000504 GO:0003723
Amo10g1935 579 CDD RRM3_RBM39_like 484 566 - -
Amo10g1935 579 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 407 503 IPR029123 -
Amo10g1935 579 SUPERFAMILY RNA-binding domain, RBD 205 293 IPR035979 GO:0003676
Amo10g1935 579 Gene3D - 184 310 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g1935 Amo-Chr10 69950405 69956227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g1935 211 378 Eukaryotic Initiation Factors Gene Family AT1G49760 30.814 5.66e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g1935 K13091 - gmx:100802446 681.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo10g1935 10 69950405 69956227 Amo20g2456 20 114854959 114855903 hybridization
Amo13g3980 13 132324652 132330598 Amo10g1935 10 69950405 69956227 PCT
Amo10g1935 10 69950405 69956227 Amo13g3980 13 132324652 132330598 PCT