Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Amo10g1924 | ATGTGTATTGCAAAGGTGGCGAATCCTCAAGAGAAAGGAAACAAGGTTGTTGAGAAGAGGGAATTGGAAGTTGATGAGAGGATAAACAACAACAATTCTACGTTGTCATCATCAATGCATATGATATTCCCAGGTTTGAATAGGGAGGAGGAGATGTCTGCCATGGTTTCGGCTTTGACCCATGTTGTCTCTGGTGAAGTTCCAACCAGTGCAGGTGACGATTATTCACTTCCAACAAGTAACATGGCTTATGGTTCTTCAACATTTTCTAATTATGTTGTTGGAAGCGGCTCTTCTTCTATCAAGAGAACTAGGCAGCAAGATGATATATCCTTTGTTGACCACTTCTCTTCATCACATGGTGTAACTTCTTCATCCCCTACTACTATTCATACAACAATGAATAGAGAATGTTCAAGAGAAAGTGGAAGTGGGAGTGGAGAGGTGGAAGGAGAAAACAGGGGAAGGACAGTCTATGAATACAGAGCAAGAGAAGAGAATGTGAGAGAGGAAGAGCCAAGAAGGAAATACAGAGGCGTGAGGCAGAGGCCATGGGGCAAGTGGGCAGCCGAGATCAGAGACCCATTCAAAGCCGCCAGAGTCTGGTTAGGCACCTTTGACACTGCCGAGGCCGCGGCCAGAGCCTACGACCAAGCCGCCCTCCGTTTCCGGGGCAACAAGGCCAAACTCAACTTCCCCGAAAATGTCACGCTCCTCCGCCACGCGCCACCGCAAATCACTGCTTCTTCGCTCGTGGCCATTCCAACTTCCACCGAAGCCATTGTTCACAGTGAGCCTCTTATTAGCACTACTTTGCATGGTTTTTCTTTTTCTTCTTCTTCTTCCGCGGGTTTGTATGGGAATTTTCCCACCATGGATTCCACTATGACGGTTATGGCTTCAAGTGTGGCTTCTCATCTTCGTCATTCTTCTCTGTCTTCAACGCAAGCTTCGCCGCCGTTCTTGTCTTCCTCTTCTGCGTTCGGTTCCACTAAGCAGTTGCCGGCGGCGTGGTCATCGGCTTCCGGTAACAGCTCTTCTTCGTCGGGATAG | 1053 | 0.4824 | MCIAKVANPQEKGNKVVEKRELEVDERINNNNSTLSSSMHMIFPGLNREEEMSAMVSALTHVVSGEVPTSAGDDYSLPTSNMAYGSSTFSNYVVGSGSSSIKRTRQQDDISFVDHFSSSHGVTSSSPTTIHTTMNRECSRESGSGSGEVEGENRGRTVYEYRAREENVREEEPRRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTAEAAARAYDQAALRFRGNKAKLNFPENVTLLRHAPPQITASSLVAIPTSTEAIVHSEPLISTTLHGFSFSSSSSAGLYGNFPTMDSTMTVMASSVASHLRHSSLSSTQASPPFLSSSSAFGSTKQLPAAWSSASGNSSSSSG* | 351 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Amo10g1924 | 350 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 | 47 | 346 | - | - | |
Amo10g1924 | 350 | CDD | AP2 | 176 | 235 | IPR001471 | GO:0003700|GO:0006355 | |
Amo10g1924 | 350 | Pfam | AP2 domain | 176 | 225 | IPR001471 | GO:0003700|GO:0006355 | |
Amo10g1924 | 350 | SMART | rav1_2 | 176 | 239 | IPR001471 | GO:0003700|GO:0006355 | |
Amo10g1924 | 350 | PRINTS | Ethylene responsive element binding protein signature | 177 | 188 | IPR001471 | GO:0003700|GO:0006355 | |
Amo10g1924 | 350 | PRINTS | Ethylene responsive element binding protein signature | 199 | 215 | IPR001471 | GO:0003700|GO:0006355 | |
Amo10g1924 | 350 | ProSiteProfiles | AP2/ERF domain profile. | 176 | 233 | IPR001471 | GO:0003700|GO:0006355 | |
Amo10g1924 | 350 | MobiDBLite | consensus disorder prediction | 121 | 154 | - | - | |
Amo10g1924 | 350 | SUPERFAMILY | DNA-binding domain | 176 | 234 | IPR016177 | GO:0003677 | |
Amo10g1924 | 350 | PANTHER | DNA-BINDING DOMAIN | 47 | 346 | IPR044808 | GO:0003700|GO:0009873 | |
Amo10g1924 | 350 | MobiDBLite | consensus disorder prediction | 121 | 142 | - | - | |
Amo10g1924 | 350 | Gene3D | AP2/ERF domain | 175 | 235 | IPR036955 | GO:0003700|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Amo10g1924 | Amo-Chr10 | 69656201 | 69658708 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Amo10g1924 | 170 | 243 | AP2-EREBP Transcription Factor Family | AT5G13330 | 71.605 | 1.02e-33 | 122 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2 or ERF-ERF | Amo10g1924 | AP2 | 3.8e-15 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Amo10g1924 | - | - | aip:107621817 | 552.362 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Amo10g1924 | 10 | 69656201 | 69658708 | Amo20g2443 | 20 | 114360002 | 114362075 | hybridization |