Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g1916 ATGAAACCTACACTCTACACTCGCAACACCTCTCTCTCTGTCTCTGTCTTTGTTTTCCTCATCGGAGTGCTTTCCGTACAAGTGGCAGTGGCATCGTCTTCACCCTCTTCTCCTCCGCGAGACCCAACTCATCAACTCCTCAGCTTCAAAGCCACTCTCCCAAACCCTTCCCTCCTTTCCAACTGGCTCCCCAACACCAACCCCTGTTCCTTCACCGGCATCACCTGCACCACTACCGCCGGCGCCGGCGCCTCAGTGACAAGCATAGACCTATCCTCCGTCCCACTCACCACCAACCTCACCGCCGTGGCAACCTTCCTCCTGCCACTGGACCACCTGCAGGTGCTGTCCCTGAAATCCGCCAACCTTACTGGCCCCATTCCCTCCCCTTCAAACTCGTGCTCCTCCTCCCTAACCACCATAGATCTCTCTCAAAACGCAATCTCAGGGTCCCTAAACGACATGTCGTTCCTGTCGTCGTGCAACGCGCTCCAATCCCTGAACCTCTCCAACAACCTCCTCGAGTTCCCCGCTAACGGTTCTCCCAAATGGACACTCCGAACCGGTAACTTCCTCAAAGTAGTAGACCTCTCCTATAACAAACTCACCGGCCCCAACGTCCTCCCTTGGATCCTCTCCACTGGCTGTACAGGTCTCCGCACGCTCAACCTCAAGTCCAACAAGCTCACCGGGGTAACCGACTTCTCCAGTTGCCGGAGCCTCCAGCATTTAGACCTCTCCTCCAACAACTTCTCCGTCGCCATTCCCTCCCTCGGCGATTGCTCCTCCCTCCAACACCTCGACCTCTCTGCCAACAAGTACTTCGGCGACATTACACGTGTCGTCTCCTCCTGCACCGAACTTGTTTATCTCAACGTCTCCGGTAACCAGTTCTCCGGCCCTGTTCCCTCACTCCCCACCGGTTCGCTCCAGTTTCTTTACCTCTCCGGCAATCACTTTACCGGTCAGATTCCGGTCGCCATGGCGGAAGGTCTCTGCTCTACGCTTGTTGAACTCGATCTCTCGTCCAATAACCTCACGGGTCCAGTTCCCCACGAGTTCACGTTGTGTTCGTCTCTCATCTCGTTCGATATATCGGCTAACAGATTTACCGGTGAGTTACCGATTGAGATTTTTGTGAAAATGGAGGGGTTGAAGGAGCTTTCTGTTGGGTTCAACCAGTTCGAAGGGTTGCTCCCAGAGTCATTGACGGAGATGGTGAGTTTAGAATCCTTAGATCTGAGTTCGAACAATTTCTATGGTACAATCCCAAAGTGGCTATGTCAAGATCCTAGGAATCGTTTGAAGGAACTGTTCCTACAGAATAATCACTTCACGGGTTCTATTCCGTCCACTCTCAGCAACTGTTCTAACCTAGTGGGATTGGATTTGAGCTTCAACTACCTGAATGGAAGTATCCCTTCCACTTTGGGGTCACTCTCCAACCTCCGAGACTTGATCATATGGCTGAACCAGCTGACTGGTGAGATTCCGCAGGAGCTGGGTAACATAAAGACGCTACAGAATTTGATCCTGGACTTCAATGAGCTAACAGGAAGTATCCCTGCCGGTTTAAGCAACTGCACGCAGTTGAATTGGATTTCCCTTTCAAACAACATGCTCACGGGGGAGATCCCTTCCTGGATTGGAAAGCTTTCGAATTTGGCGATCTTGAAGCTTAGCAACAACTCATTCTCCGGCAGCATTCCGCCAGAGCTGGGCGACTGCCACAGCCTGATTTGGTTGGATCTCAACACCAATAAGCTGACCGGAGCAATCCCGCCCGAGCTTTTCAAGCAGTCGGGGAAGATTGCGGTAAATTTCATCAGTGGGAAGACTTATGTTTACATAAAGAATGATGGGAGCAAGGAGTGCCATGGCGCCGGGAACTTGCTGGAGTTTGCGGGGATCAGCCAGAAGCAGCTCAACAGGATTTCAACAAAGAACCCCTGCAACTTCACCAGGGTCTATGGAGGTAAGCTTCAGCCAACGTTTAACCATAATGGTTCCATGATCTTCTTGGACATTTCTCACAACATGTTGTCTGGTACGATTCCTAAGGAGATTGGTGTAATGTACTATCTCTACATTCTCAATTTGGGGCATAATAACATTTCTGGTAGCATTCCTCAAGAGCTTGGCAGCATGAAGAACCTCAACATTCTTGATCTCTCCCACAATAGGCTCCAAGGCTCCATTCCACAGAGCTTGACTAGTCTCTCCCTGTTAACAGAGATTGATTTTTCTAACAACTTCTTGGCCGGGTTGATTCCCGAGTCCGGTCAATTCGACACCTTTCCGGCGACAAGATTCCAGAACAATTCTGGTCTCTGTGGAGTGCCTCTTCCTCCCTGCACTGCCGACTCAGGTCTCGGTGGTGCTCAGAATCAGAAGTCTAATAACAAGAAGCAGGCGTCTCTTGCAGGGAGTGTGGCCATGGGCTTGCTATTCTCCCTCTTCTGCATATTTGGTCTGATGATTATCGCCATTGAGGCTAGGAAGAGGAGGAAGAAAAAGGAAGCGGCGCTCGAGGCCTATGTGGAAGGAAATTCGCATTCCGGCACTGCCAATGGTGGCTGGAAATTGACAAGTGCCCGGGAAGCTCTGAGTATAAACCTCGCCACATTCGAGAAGCCTCTAAGGAAGCTTACATTTGGAGATCTTCTGGAAGCCACCAATGGGTTCCACAATGATAGTCTTATTGGCTCTGGAGGGTTTGGTGATGTGTATAAGGCTCAGTTGAAGGATGGAAGCCTTGTTGCCATCAAGAAACTGATTCATGTAAGTGGACAAGGAGATAGAGAATTCACTGCTGAAATGGAAACCATTGGGAAAATCAAGCACAGGAACCTTGTTCCTCTTCTTGGATACTGCAAGGTTGGGGAAGAAAGGCTCTTGGTATATGACTACATGAAATATGGAAGCCTTGAAGATGTTCTGCACGATCAGAAGAAAGCCGGCATCAAGTTGAATTGGGCAGTGAGGAGAAAAATCGCAATTGGCGCGGCTAGGGGATTGGCTTTCCTTCACCACAATTGCATCCCTCACATCATTCATAGAGACATGAAGTCGAGCAATGTGTTGCTAGATGAGAATCTCGAAGCAAGAGTCTCCGATTTCGGAATGGCAAGACTAATGAGTGCAATGGATACACATTTGAGTGTTAGCACACTGGCAGGAACACCGGGTTATGTGCCTCCAGAGTACTATCAAAGCTTTAGATGCTCAACTAAAGGTGATGTCTATAGTTATGGCGTGGTTTTGTTGGAGCTTCTAACAGGGAAAAGGCCAACAGATTCAGCTGATTTTGGTGATAATAATCTTGTGGGGTGGGTGAAACAGCATGCAAAGTTGAAGATAAGCGATGTTTTTGACCCTGAGTTGATGAAGGAAGAGCCAAGCCTAGAGATTGAGCTTCTTCAGCACTTGAAGGTTGCATGTGCTTGTTTGGATGATAGGCCTTGGAGAAGACCAACAATGATTCAGGTCATGGCCATGTTCAAGGAGATTCAAGCAGGTTCAGGGGTTGATTCACAATCCACAATAGTCACAGATGATGAAAGTTTCAGTACAATTGAAATGGTAGAAATGAGCATTAAAGAAGCACCATGA 3612 0.4911 MKPTLYTRNTSLSVSVFVFLIGVLSVQVAVASSSPSSPPRDPTHQLLSFKATLPNPSLLSNWLPNTNPCSFTGITCTTTAGAGASVTSIDLSSVPLTTNLTAVATFLLPLDHLQVLSLKSANLTGPIPSPSNSCSSSLTTIDLSQNAISGSLNDMSFLSSCNALQSLNLSNNLLEFPANGSPKWTLRTGNFLKVVDLSYNKLTGPNVLPWILSTGCTGLRTLNLKSNKLTGVTDFSSCRSLQHLDLSSNNFSVAIPSLGDCSSLQHLDLSANKYFGDITRVVSSCTELVYLNVSGNQFSGPVPSLPTGSLQFLYLSGNHFTGQIPVAMAEGLCSTLVELDLSSNNLTGPVPHEFTLCSSLISFDISANRFTGELPIEIFVKMEGLKELSVGFNQFEGLLPESLTEMVSLESLDLSSNNFYGTIPKWLCQDPRNRLKELFLQNNHFTGSIPSTLSNCSNLVGLDLSFNYLNGSIPSTLGSLSNLRDLIIWLNQLTGEIPQELGNIKTLQNLILDFNELTGSIPAGLSNCTQLNWISLSNNMLTGEIPSWIGKLSNLAILKLSNNSFSGSIPPELGDCHSLIWLDLNTNKLTGAIPPELFKQSGKIAVNFISGKTYVYIKNDGSKECHGAGNLLEFAGISQKQLNRISTKNPCNFTRVYGGKLQPTFNHNGSMIFLDISHNMLSGTIPKEIGVMYYLYILNLGHNNISGSIPQELGSMKNLNILDLSHNRLQGSIPQSLTSLSLLTEIDFSNNFLAGLIPESGQFDTFPATRFQNNSGLCGVPLPPCTADSGLGGAQNQKSNNKKQASLAGSVAMGLLFSLFCIFGLMIIAIEARKRRKKKEAALEAYVEGNSHSGTANGGWKLTSAREALSINLATFEKPLRKLTFGDLLEATNGFHNDSLIGSGGFGDVYKAQLKDGSLVAIKKLIHVSGQGDREFTAEMETIGKIKHRNLVPLLGYCKVGEERLLVYDYMKYGSLEDVLHDQKKAGIKLNWAVRRKIAIGAARGLAFLHHNCIPHIIHRDMKSSNVLLDENLEARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGKRPTDSADFGDNNLVGWVKQHAKLKISDVFDPELMKEEPSLEIELLQHLKVACACLDDRPWRRPTMIQVMAMFKEIQAGSGVDSQSTIVTDDESFSTIEMVEMSIKEAP* 1204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g1916 1203 Pfam Leucine rich repeat N-terminal domain 44 76 IPR013210 -
Amo10g1916 1203 SMART serkin_6 895 1167 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo10g1916 1203 SUPERFAMILY L domain-like 84 375 - -
Amo10g1916 1203 Gene3D Transferase(Phosphotransferase) domain 1 971 1172 - -
Amo10g1916 1203 ProSiteProfiles Leucine-rich repeat profile. 718 741 IPR001611 GO:0005515
Amo10g1916 1203 SMART LRR_typ_2 716 739 IPR003591 -
Amo10g1916 1203 SMART LRR_typ_2 382 405 IPR003591 -
Amo10g1916 1203 SMART LRR_typ_2 238 261 IPR003591 -
Amo10g1916 1203 SMART LRR_typ_2 406 430 IPR003591 -
Amo10g1916 1203 SMART LRR_typ_2 552 576 IPR003591 -
Amo10g1916 1203 SMART LRR_typ_2 577 600 IPR003591 -
Amo10g1916 1203 SMART LRR_typ_2 740 763 IPR003591 -
Amo10g1916 1203 ProSiteProfiles Protein kinase domain profile. 895 1170 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo10g1916 1203 SUPERFAMILY Protein kinase-like (PK-like) 881 1175 IPR011009 -
Amo10g1916 1203 Pfam Protein kinase domain 895 1165 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo10g1916 1203 Gene3D Phosphorylase Kinase; domain 1 857 970 - -
Amo10g1916 1203 ProSitePatterns Protein kinases ATP-binding region signature. 901 924 IPR017441 GO:0005524
Amo10g1916 1203 SUPERFAMILY L domain-like 663 782 - -
Amo10g1916 1203 ProSiteProfiles Leucine-rich repeat profile. 240 262 IPR001611 GO:0005515
Amo10g1916 1203 Pfam Brassinosteroid receptor island domain 602 666 IPR045381 -
Amo10g1916 1203 CDD STKc_IRAK 901 1170 - -
Amo10g1916 1203 Pfam Leucine rich repeat 695 751 IPR001611 GO:0005515
Amo10g1916 1203 Pfam Leucine rich repeat 359 419 IPR001611 GO:0005515
Amo10g1916 1203 Pfam Leucine rich repeat 192 251 IPR001611 GO:0005515
Amo10g1916 1203 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1017 1029 IPR008271 GO:0004672|GO:0006468
Amo10g1916 1203 Gene3D Ribonuclease Inhibitor 46 785 IPR032675 -
Amo10g1916 1203 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 15 1182 - -
Amo10g1916 1203 PRINTS Leucine-rich repeat signature 336 349 - -
Amo10g1916 1203 PRINTS Leucine-rich repeat signature 716 729 - -
Amo10g1916 1203 Gene3D - 607 667 - -
Amo10g1916 1203 SUPERFAMILY RNI-like 280 596 - -
Amo10g1916 1203 PANTHER SYSTEMIN RECEPTOR SR160 15 1182 - -
Amo10g1916 1203 ProSiteProfiles Leucine-rich repeat profile. 218 239 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g1916 Amo-Chr10 69098849 69102972 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g1916 33 1203 Receptor kinase-like Gene Family AT4G39400 68.846 0.0 1565
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Amo10g1916 Pkinase 1.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g1916 K13415 - gmx:100499629 1774.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo10g1916 10 69098849 69102972 Amo20g2422 20 113324382 113328616 hybridization