Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g1908 ATGTTTGAAGAGCAGGTGATGATTGATGAGATCCCTCCTCCTCTCCAATTCGGATGCCTTGAATCTTTGAATAATAATAACAATAATAAAGCTTTCCTGGGTGCCATAGCTTCTCCACCACCAGATCTCGTCACTTCTTCTTGTTTGGGAGCAGCACACCAACTCCTTTCACTCAACAGATCCACTGCAAATAATTCATGGGCATGGGGTCAGGTAACAGCAGAAGATTGTGTGATGATGATGAGGGTGGGTAACAAAAGAGGAGGAGATGTTCATAGCCATGTAGGGTTAGGGATTGCAGCGATGAAGATGAAAATGAAGAAGACGAAAGTGAGAAGGAAGGTGAGGGAGCCTAGGTTTTGCTTCAAGACCATGAGTGATGTCGATGTTCTCGACGACGGTTACAAATGGAGAAAGTACGGCCAGAAAGTCGTCAAGAACACACAACACCCCAGAAGCTACTACCATTGCACAGAAGAAAAGTGTAGAGTAAAGAAACGAGTGGAGCGCTTAGCAGAGGATCCAAGGATGGTTATAACAACGTATGAAGGAAGACATGTTCATTCTCCCTCCAACGACCTCCAAGCATCCGAAACTACTTCTCAACTCACCGATTTCCTATGGTAG 627 0.4498 MFEEQVMIDEIPPPLQFGCLESLNNNNNNKAFLGAIASPPPDLVTSSCLGAAHQLLSLNRSTANNSWAWGQVTAEDCVMMMRVGNKRGGDVHSHVGLGIAAMKMKMKKTKVRRKVREPRFCFKTMSDVDVLDDGYKWRKYGQKVVKNTQHPRSYYHCTEEKCRVKKRVERLAEDPRMVITTYEGRHVHSPSNDLQASETTSQLTDFLW* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g1908 208 SMART WRKY_cls 131 190 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo10g1908 208 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 47 198 IPR044810 GO:0003700
Amo10g1908 208 Pfam WRKY DNA -binding domain 132 188 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo10g1908 208 MobiDBLite consensus disorder prediction 188 208 - -
Amo10g1908 208 PANTHER WRKY TRANSCRIPTION FACTOR 13-RELATED 47 198 - -
Amo10g1908 208 ProSiteProfiles WRKY domain profile. 126 191 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo10g1908 208 Gene3D WRKY domain 118 184 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo10g1908 208 SUPERFAMILY WRKY DNA-binding domain 123 190 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g1908 Amo-Chr10 68598308 68600435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g1908 90 208 WRKY Transcription Factor Family AT4G39410 69.355 6.86e-59 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo10g1908 WRKY 1.3e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g1908 - - gmx:100127389 226.483
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo10g1908 10 68598308 68600435 Amo20g2421 20 112975267 112981106 hybridization