Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g1902 ATGGCTTCAACGGACATCAGAGACATTCTCACAGCTTTTAGTCCTTCTTTGGACTACTTCGCCATCAGCACCGGCGATGGCCGCGTTAAGATATGGGATACATTGAAGGGTCAGGTACAGACTGAGTTTGCAGATATGACATCAAATGACACAAGAAGTATATATGATAGATCCACGAATGGACATCTCTCAATAGACTATACGTGCATGAAGTGGTTGTCGTTGGAAAGAAAGAAAAAAAGAAAGCATGCATCCTCATTGTTAGTGCTTGGGACTGGTGGTGGTGATGTTTTAGCATTTGACGTGTCTGCTGGTCAATTGAATTGGAGAATTAGCAACTGTCATCCAGGAGGTGTGAGAGCCATTTCATCGTCAGCAAATGGATCATGTATCTATACTGCAGGGGCAGATGGGATGATATGTAGAATTGATTCCGTCACGGGAAACCTGTTGGAGAAATTTAAAGCTTCTACAAAGGCTGTATCCTGTATGACTATTTCCTCAGATGGGAAGACTTTAGCTACTGCAGCATCACAATTGAAGATCTTTAACAGTTCTAATCACAAAAAGATTCAAAAGTTCTCTGGTCATCCTGGATCTGTTAGATGCTTGGTCTTCACTGAAGATGGCAAGTATATCCTTTCATCTGCCGTTGGTGAAAGATATGTTGCTCTGTGGAGGATAGATGGTGCCAGAAAACAGTCAGTTAGTTGTGTTCTTGCAATGGACCATCCTGCTGTCTTTCTTGATAGCAGGTGCATTGATAGCGGGGAACATGATGAGAACGGCATATGTGTTTTGGCCATCTCAGAAGTTGGTGTTTGTTATTTCTGGTTTGGAAATAGTATTGAAGAACTACGTAATGCCAAACCCACAAAAATATCATTATCTTCGGAAGATATATTCTCAAGAAAATACAAGGGTGCATTGCCAACAATATATGCTGCAAAGTTACAAGGCATACAGAAGCCTGCATCTGGGCATGTTTTTCTTGTTTCTGGGTTGCTTGTAAAACCATCATTTCAAAAACTTTTAGTGCATTCTGGTACAGATGTACAGTTGAATGTCTCCCATGATGGTATTCTTCTTCCAATGAGTCAATCTCTTGTTAAATCTAAGAAGCGGTCAGATGAACGAAGAGTAACTGCACTAGACCGTGCTAATGCAGAAGATGCCTTGCTTCCGATTCCTAAGGTTTTTTATTCTTCTGAGAAAGAGAAAGCATTCCAAGACTCTTCAGACAGAAATGCAACAGATGGTTTGTTTAGAATTAATAAAGCTGATTCTATCAAGAAACAAGATGAAATGATCCAAGATGAGATCAATGCAGTTTGTATGGAGGACCAGCTGAGATCACTAGGGATACTTAAAAGTGAAAAAGAGTGTTCATCAAACCTTGAAAAATACTATCCATTATTGAAGGGTATTAATCTTGAAGCTGTTACTCCAACGAAAAAGATTAGAGCAACTGTTTTGTCAATGGAGCCAAGTGAAGCAGTCAAGCTACTTGAACCGTTACTGGCTGCTTGGCAGTCAAGGTCATCTAGTGGAAAGTATGTTCTTCCCTGGATATATAACATATTAGTAAATCATGGTCGCAATTTCACTGCTGAAGAATTTGCAACATGTATGCTTGATTCCTTGTATAAGATTACCAATTCTAGAGGGCCTACGTTTCAGTCTTTATTACAATTATCAGGTCGCCTGCAACTAATGACATCACAGATTGACAAGGCATCTCAGACCGTAAGTCATCCAGTACATGATCTCCAAATGGATGAAAGTGGAGACGAGGATGAAGAGGATGAATATTTTCATGATGAAGGAGATGATGACTCTGAAATAAGCAGTGATGATGAAAGCTAG 1866 0.3998 MASTDIRDILTAFSPSLDYFAISTGDGRVKIWDTLKGQVQTEFADMTSNDTRSIYDRSTNGHLSIDYTCMKWLSLERKKKRKHASSLLVLGTGGGDVLAFDVSAGQLNWRISNCHPGGVRAISSSANGSCIYTAGADGMICRIDSVTGNLLEKFKASTKAVSCMTISSDGKTLATAASQLKIFNSSNHKKIQKFSGHPGSVRCLVFTEDGKYILSSAVGERYVALWRIDGARKQSVSCVLAMDHPAVFLDSRCIDSGEHDENGICVLAISEVGVCYFWFGNSIEELRNAKPTKISLSSEDIFSRKYKGALPTIYAAKLQGIQKPASGHVFLVSGLLVKPSFQKLLVHSGTDVQLNVSHDGILLPMSQSLVKSKKRSDERRVTALDRANAEDALLPIPKVFYSSEKEKAFQDSSDRNATDGLFRINKADSIKKQDEMIQDEINAVCMEDQLRSLGILKSEKECSSNLEKYYPLLKGINLEAVTPTKKIRATVLSMEPSEAVKLLEPLLAAWQSRSSSGKYVLPWIYNILVNHGRNFTAEEFATCMLDSLYKITNSRGPTFQSLLQLSGRLQLMTSQIDKASQTVSHPVHDLQMDESGDEDEEDEYFHDEGDDDSEISSDDES* 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g1902 621 Pfam WD domain, G-beta repeat 190 226 IPR001680 GO:0005515
Amo10g1902 621 Pfam WD domain, G-beta repeat 10 33 IPR001680 GO:0005515
Amo10g1902 621 SMART WD40_4 187 227 IPR001680 GO:0005515
Amo10g1902 621 SMART WD40_4 104 144 IPR001680 GO:0005515
Amo10g1902 621 SMART WD40_4 147 184 IPR001680 GO:0005515
Amo10g1902 621 SMART WD40_4 2 33 IPR001680 GO:0005515
Amo10g1902 621 PANTHER OS03G0300300 PROTEIN 1 620 - -
Amo10g1902 621 PANTHER OS03G0300300 PROTEIN 1 620 - -
Amo10g1902 621 MobiDBLite consensus disorder prediction 593 621 - -
Amo10g1902 621 Pfam Dip2/Utp12 Family 482 573 IPR007148 -
Amo10g1902 621 ProSiteProfiles Trp-Asp (WD) repeats profile. 12 42 IPR001680 GO:0005515
Amo10g1902 621 MobiDBLite consensus disorder prediction 580 621 - -
Amo10g1902 621 Gene3D - 144 279 IPR015943 GO:0005515
Amo10g1902 621 Gene3D - 5 143 IPR015943 GO:0005515
Amo10g1902 621 ProSiteProfiles Trp-Asp (WD) repeats profile. 194 236 IPR001680 GO:0005515
Amo10g1902 621 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 12 339 IPR011047 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g1902 113 232 U-box Gene Family AT2G33340 29.839 3.35e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g1902 K14546 - gmx:100815458 872.078