Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g1868 ATGTCCAGAGAAAGGGAGAGATTTGAGGAGATAGGGAAGAAGATAAAGAGGGAAGGAGATAATGTTTCAAGTCAAATGGGAAGAAGACACATGTTAGGGCCACCAGGAACCCTAAACACAATTACACCATGTGCAGCATGCAAGCTACTGCGACGAAGATGCGCACAAGAATGCCCCTTCTCTCCATATTTCTCACCTCATGAGCCCCAAAAGTTCGCTTCTGTCCACAAAGTCTTTGGTGCCAGCAACGTCTCCAAGATGCTCATGGAGGTACCGGAGTGCCAAAGAGCTGATGCAGCGAATAGTCTAGTTTATGAGGCTAATGTGAGGCTAAGAGATCCAGTTTATGGATGCATGGGTGCAATTTCAACATTGCAGCATCAAGTTCAATCTTTACAAGCTGAACTCAATGCAGTGAGGTCAGAAATACTTAAATACAAACTCAGAGAAGCTAATAACAATATCATTATTCCCTCCTCCCACCATCATCTTCCTATGCTCCCTTCATCCGGGGCTGCTGTTTCCGTCGCTGCTCCTCCTCCTCCGCCACCACCACTTCCTCCTAATTCTCTCCCTCCCATTTCTTCCTCTTCTTCCTCCATGTACATCCAACAACAACAGAGGCCTCCCACCAACTATAGCAGAATTCCAAGTGACAATATTTCTTATTTTGGTTAA 678 0.4558 MSRERERFEEIGKKIKREGDNVSSQMGRRHMLGPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPECQRADAANSLVYEANVRLRDPVYGCMGAISTLQHQVQSLQAELNAVRSEILKYKLREANNNIIIPSSHHHLPMLPSSGAAVSVAAPPPPPPPLPPNSLPPISSSSSSMYIQQQQRPPTNYSRIPSDNISYFG* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g1868 225 ProSiteProfiles LOB domain profile. 42 143 IPR004883 -
Amo10g1868 225 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 24 225 - -
Amo10g1868 225 MobiDBLite consensus disorder prediction 193 225 - -
Amo10g1868 225 MobiDBLite consensus disorder prediction 172 225 - -
Amo10g1868 225 Pfam Lateral organ boundaries (LOB) domain 43 140 IPR004883 -
Amo10g1868 225 PANTHER LOB DOMAIN-CONTAINING PROTEIN 15 24 225 - -
Amo10g1868 225 MobiDBLite consensus disorder prediction 175 192 - -
Amo10g1868 225 Coils Coil 122 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g1868 Amo-Chr10 66873214 66874545 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g1868 28 225 AS2 family AT2G40470 71.212 1.92e-76 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Amo10g1868 LOB 2.1e-40 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo10g1868 10 66873214 66874545 Amo20g2379 20 111636528 111637876 hybridization