Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g1861 ATGATGGAAACACTTCCTTCAGTACCAGGATCTCCTTTGTTGAACACACAAGTACTTAGGAGGTACAAATCGCCATGCACTTTTGTGGTTCCTAACTACTCTCTTAGATTCACTCGGATATGCTGCAAGAAGCTATCAGAAAATGGCATTGATGAGAAGCACAAACCCTCCACCAGCAATACCACTGCCTCTAAATCCAAGGACAGAATGGAAGATTACAATATTGCTATGAAGAGAATGATGAGGAATCCTTATGAGTATCACCACGATCTGGGTATGAATTACACACTTATAACTGACAATCTCATTGTGGGATCCCAACCACAGAAACCTGAAGACATCGATCACCTCAAGAAGGAAGAGGGTGTGACATACATTCTGAACTTGCAGCAGGATAAGGATGTAGAATATTGGGGAATAGACTTGAAGTCGATAACAAGGAGGTGTCATGAACTCGATGTTCGACATATGAGGAGGCCGGCAATTGACTTTGATCCAAACTCCTTGCGAAATGTTCTACCTAAAGCAGTCTCATCATTGGAATGGGCAATCTCAGAGGGAAAAGGAAGAGTTTATGTGCATTGTACTGCTGGACTTGGGAGAGCACCAGGGGTGGCAATAGCTTATTTGTTCTGGTTCTATGACATGAATCTAAATACCGCATATGAGTTGTTAACTTCAAAGAGACCATGTGGACCTAATAAAAGAGCAATACGAGGAGCTACCAATGATTTGGCCAAGAATGATCCATGGAAGGAGCCATTTGAGTCTCTTCCAGATCATGCATTTGAAGATATAGCAGACTGGGAGAGGAAATTGATTCAAGATCGCGTTCGCTCCCTTCGTGGAACTTGA 855 0.4269 MMETLPSVPGSPLLNTQVLRRYKSPCTFVVPNYSLRFTRICCKKLSENGIDEKHKPSTSNTTASKSKDRMEDYNIAMKRMMRNPYEYHHDLGMNYTLITDNLIVGSQPQKPEDIDHLKKEEGVTYILNLQQDKDVEYWGIDLKSITRRCHELDVRHMRRPAIDFDPNSLRNVLPKAVSSLEWAISEGKGRVYVHCTAGLGRAPGVAIAYLFWFYDMNLNTAYELLTSKRPCGPNKRAIRGATNDLAKNDPWKEPFESLPDHAFEDIADWERKLIQDRVRSLRGT* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g1861 284 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 18 284 - -
Amo10g1861 284 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 170 230 IPR000387 GO:0016311|GO:0016791
Amo10g1861 284 Pfam Dual specificity phosphatase, catalytic domain 115 234 IPR000340 GO:0008138|GO:0016311
Amo10g1861 284 CDD DSP_laforin-like 93 240 IPR045204 GO:0019203|GO:0046838
Amo10g1861 284 SMART dsp_5 94 244 IPR020422 GO:0006470|GO:0008138
Amo10g1861 284 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 91 235 IPR029021 -
Amo10g1861 284 Gene3D Protein tyrosine phosphatase superfamily 77 284 IPR029021 -
Amo10g1861 284 ProSiteProfiles Dual specificity protein phosphatase domain profile. 94 251 IPR020422 GO:0006470|GO:0008138
Amo10g1861 284 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF2, CHLOROPLASTIC 18 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g1861 Amo-Chr10 66374743 66376991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g1861 23 284 Protein tyrosine phosphatase (PTP) family AT3G10940 73.606 9.29e-144 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g1861 - - gmx:100787079 448.743
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo10g1861 10 66374743 66376991 Amo20g2369 20 110718619 110720612 hybridization