LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo10g1850	ATGCAAGAATTTAGGGGTAAGTTGCAGAAGGTGATAAAGAAAGCGAATCCAGATATAGATTGGGGGGTTTTCAATAACTACAACAACTACTACTACAACAACAGAAAGGAGGAATCTAAATCAGGCTCCGATGAATTGCCATCGCCTCGGGGGATGTTCGAAGCTATGTCGACTGCTGACTCCGACTACAGCTCCCGCGGGAGCAGCAGCAACTACAGCAGCCTACATTCCCCGGGGAATCGCCCTCCCTCGCCGCCGGGTCCGGGTTTGCCAAAGGCGAACTCGACGAAGGGGGACGTGAACGGGCAGCAGCAGTGGAAGGTAATGATTGACGTGCTGAGGTTCAAGAACGTTAGAAGGTTCTCGAACATCCCCTTGTTAGCCGCTAGCTACGAGATCTCTAGGAAGAACCTAAGGAAGAAGGTGGCTCGCAAGAGAGACGGCGAAGACGATGACGATCTTCCCATTGATCTCGATAGCATCCCAACGAAGCCTTCTTGGCGAAATTTCCCTTACGCTGATCTCGCTGCTGCCACCGATAATTTCTCCCCTGAGAACATGCTTGGAAAAGGTGGTCATGCTGAAGTCTATAGAGGATGTTTACCGGACGGTCAAATTGTAGCAGTGAAGAGGCTGATGATGAATGATGAGAAGGAAATTGAGGACCAAGTTGGTGATTTCTTGTCAGAGCTTGGAATCATTGCTCACATAAACCACCCAAATGCAGCACTCCTTCTGGGATTTGGCATTGAGAAGGGCCTCTACTTTGTCCTCCAATACGCTCCTCGTGGCAGCCTCTCTTCTTTACTCTTTGGTTCTCAAGGCTTGGAGTGGAAGGCAAGGTTCAAGGTAGCTTTGGGGGTCGCCAAAGGATTGAAGTACCTCCATCATGATTGTCCAAGAAGAATCATTCACAGAGACATCAAAGCCTCAAACATATTACTCGACAATAACTATGAAGCTGAGATTTCGGATTTCGGATTGGCAAAGTGGCTTCCAGACCAGTGGGAACATCATGTTGTGTTCCCCATTGAAGGCACATTCGGGTATTTGGCTCCAGAATACTTTATGCATGGACTTGTGGATGAGAAGACTGATGTATTTGCATTCGGGGTTTTGTTATTGGAACTCATAACTGGGCGTCGCGCAGTCGATTCAAACAGCAGGGAGAGTCTTGTGATCTGGGCAAAACCACTGTTGGATGCAAAGCAGATTAAGGAAATAGTGGACCCAAGATTAGGAGATCAGTACGATCTTATTGAAATGAAGAATGCTATGACAACGGCTTCCCTATGTGTCCACCACAAGCCCTCCATGCGGCCATACATGAACAAGGTTGTGAAGCTGCTCAAGGGCGAAGAGGTAGCAGTTGAGATCACTCAAAAAACAAAATCCCCAAGATCATTATTGTTAGATGCATGTGATCTTGAAGACTATACTTGCTCTAATTACTTAAATGATCTTAATCGCCACAAGCAATTAATAATGGAGTGA	1494	0.4692	MQEFRGKLQKVIKKANPDIDWGVFNNYNNYYYNNRKEESKSGSDELPSPRGMFEAMSTADSDYSSRGSSSNYSSLHSPGNRPPSPPGPGLPKANSTKGDVNGQQQWKVMIDVLRFKNVRRFSNIPLLAASYEISRKNLRKKVARKRDGEDDDDLPIDLDSIPTKPSWRNFPYADLAAATDNFSPENMLGKGGHAEVYRGCLPDGQIVAVKRLMMNDEKEIEDQVGDFLSELGIIAHINHPNAALLLGFGIEKGLYFVLQYAPRGSLSSLLFGSQGLEWKARFKVALGVAKGLKYLHHDCPRRIIHRDIKASNILLDNNYEAEISDFGLAKWLPDQWEHHVVFPIEGTFGYLAPEYFMHGLVDEKTDVFAFGVLLLELITGRRAVDSNSRESLVIWAKPLLDAKQIKEIVDPRLGDQYDLIEMKNAMTTASLCVHHKPSMRPYMNKVVKLLKGEEVAVEITQKTKSPRSLLLDACDLEDYTCSNYLNDLNRHKQLIME*	498

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo10g1850	497	ProSiteProfiles	Protein kinase domain profile.	182	456	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Amo10g1850	497	PANTHER	OS08G0249100 PROTEIN	32	497	-	-
	Amo10g1850	497	PANTHER	RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-KINASE	32	497	-	-
	Amo10g1850	497	MobiDBLite	consensus disorder prediction	34	102	-	-
	Amo10g1850	497	Gene3D	Phosphorylase Kinase; domain 1	157	260	-	-
	Amo10g1850	497	Pfam	Protein kinase domain	185	447	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Amo10g1850	497	ProSitePatterns	Protein kinases ATP-binding region signature.	188	210	IPR017441	GO:0005524
	Amo10g1850	497	SUPERFAMILY	Protein kinase-like (PK-like)	162	450	IPR011009	-
	Amo10g1850	497	Gene3D	Transferase(Phosphotransferase) domain 1	262	469	-	-
	Amo10g1850	497	SMART	serkin_6	182	494	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Amo10g1850	497	MobiDBLite	consensus disorder prediction	58	78	-	-
	Amo10g1850	497	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	303	315	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo10g1850	Amo-Chr10	66181779	66184524	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo10g1850	144	473	Trihelix Transcription Factor Family	AT5G38560	41.056	7.85e-72	239

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VI	Amo10g1850		Pkinase	4.7e-39	CL0016