Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g1849 ATGTCCCAACAACCTTCTTTCTTCATCAACCCAAACCTTCAGCCACCACAACCCCTCCTGCCAAAGCTCGAATATTTCTTTCAAACCGACAGAAATGATGATGATGATTCCTCTTCCCTCACCCAAGATCTGAAAGCGCTTGCTGCTGACGCTGCCTTCCTAGCTTTCTCCTCTGCCAATTCGGTCTCTCAGGTGCTGGATGCTCACTCATCCCGGAACGATGACTTCGCGTTCTCCGCTAGTAAAGGCGGTAACTCCTCCAACTCCAAGAAGGTTGTTGGTGATACATTTGGCCAGCGAACTTCAATATACAGAGACACCGATGGACGGGACGATATGAAGCTCACCTGTGGGATAATAGCTGCCGCCGAGAGGGTCAAGCCAGGAAAGGCCGTCAAGATATGTCAGCTAGCTAAGGTTTCTAATTATATAAAGGAATTGGAAGAGATGAAAGATGTGGGGAAGCTTGAATTTATTGCATCACTACGAAGGAGAAGTAGTGGTTTCTCCAGGGGAGCTTCCATATACAGGGGTGTTACAAGGCATCATCAACAAGGTAGATGGCAAGCGAGAATAGGCCGCGTTACAGGGAACAAAGATCTATACCTAGGGACATTTGCAAGTGAAGAGGAAGCGGCGGAGGCATACGATATTGCGGCAATAAAGTTCAGAGGGTTAAATGCAGTAACCAATTTTGAGACGAGTAGGTACAACGTGGAAGCCATAATGAATAATTCTCTTCCCGTTGGCGGGGTAGCCAAACGGTTGAGGCTTTCCCTAGAATCAGAGAAGGAAGAAGCTGCTACTTCTACTACTACTACTCATACTCACCAGCCACCTAAGACCGAGAGTGAGAGTAGCATCATGACATTGTCAACCATTCCGGCTCCTCCTGCACACTTTGATTCTGTGACACCATATTGCTACCAATTTCATTCCCCCGATGCCGTTAACGATGCCATCATGCCAATGTAA 975 0.4738 MSQQPSFFINPNLQPPQPLLPKLEYFFQTDRNDDDDSSSLTQDLKALAADAAFLAFSSANSVSQVLDAHSSRNDDFAFSASKGGNSSNSKKVVGDTFGQRTSIYRDTDGRDDMKLTCGIIAAAERVKPGKAVKICQLAKVSNYIKELEEMKDVGKLEFIASLRRRSSGFSRGASIYRGVTRHHQQGRWQARIGRVTGNKDLYLGTFASEEEAAEAYDIAAIKFRGLNAVTNFETSRYNVEAIMNNSLPVGGVAKRLRLSLESEKEEAATSTTTTHTHQPPKTESESSIMTLSTIPAPPAHFDSVTPYCYQFHSPDAVNDAIMPM* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g1849 324 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 140 307 - -
Amo10g1849 324 SMART rav1_2 175 239 IPR001471 GO:0003700|GO:0006355
Amo10g1849 324 PRINTS Ethylene responsive element binding protein signature 215 235 IPR001471 GO:0003700|GO:0006355
Amo10g1849 324 PRINTS Ethylene responsive element binding protein signature 176 187 IPR001471 GO:0003700|GO:0006355
Amo10g1849 324 MobiDBLite consensus disorder prediction 271 288 - -
Amo10g1849 324 SUPERFAMILY DNA-binding domain 174 234 IPR016177 GO:0003677
Amo10g1849 324 MobiDBLite consensus disorder prediction 261 288 - -
Amo10g1849 324 ProSiteProfiles AP2/ERF domain profile. 175 233 IPR001471 GO:0003700|GO:0006355
Amo10g1849 324 CDD AP2 174 235 IPR001471 GO:0003700|GO:0006355
Amo10g1849 324 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL6 140 307 - -
Amo10g1849 324 Gene3D AP2/ERF domain 175 235 IPR036955 GO:0003700|GO:0006355
Amo10g1849 324 Pfam AP2 domain 175 225 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g1849 Amo-Chr10 66177439 66180432 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g1849 43 255 AP2-EREBP Transcription Factor Family AT5G57390 50.617 3.95e-63 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo10g1849 AP2 1e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g1849 K09285 - psom:113357587 208.764