Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g1837 ATGAAAGGCCAAAATACCGAATCCCTCTCTAAGCCCGTATCCGACCACCAACTACCTCCGTTCTCACCTGCCTCTACCACCATGCCGCCCATTGTGGATATCAGTAAAACCACCGTGAGGCCTGGTCACCGGCGCAGCAACTCGGCAGACGGCACCTCTTCTTCTTCATTGTTGTTGGAAGGCATTGAGGCCAAGAAGGCCATGTCCCCTGACAAGCTCGCTGAATTGTGGACTGTTGATCCCAAGCGAGCCAAGAGGATTTTGGCCAACCGTAAATCAGCGGCCCGCTCAAAGGAGAGGAGAGCTTGTTATGTGGTGGAGCTTGAGAGAAAAATTCAGGTTCTTCAAACAGAAGCAACTACTCTTTCAGCCCAATTAAATCTTTTTCAGAGAGATACAACTGCTCTGAATGAAGCACTGAAAAAAGAAGTTGATAGACTCAAGATTGCTACTGGAGAGATGGTAACTCGTCCCAATTCGAATAGTTTGGCAATGCAWCGGSCTTCATATTCTCAAGCTCCTTTCTTCTCGYTTCAACYGCAACATTTTGCARGCGAACTTCACACCATGCAAATGCCTCCTTTGCATCCACTRTYGCCTAATATGTCTTCCCCTCRACCGCTGATTGATGTARCTACTCCATACAATTTGTCAAACATGTTGCCAAGTGATCATGTTCCTGTTGGCCAATTTCAGGTGCTAGACATAAGTCATCCGATCCCTCATGTTCTGATTCATGATGGTCCCTCCATTTCTGTTAATAAAATCAACGATGCCTTTTGA 783 0.4598 MKGQNTESLSKPVSDHQLPPFSPASTTMPPIVDISKTTVRPGHRRSNSADGTSSSSLLLEGIEAKKAMSPDKLAELWTVDPKRAKRILANRKSAARSKERRACYVVELERKIQVLQTEATTLSAQLNLFQRDTTALNEALKKEVDRLKIATGEMVTRPNSNSLAMXRXSYSQAPFFSXQXQHFAXELHTMQMPPLHPLXPNMSSPXPLIDVXTPYNLSNMLPSDHVPVGQFQVLDISHPIPHVLIHDGPSISVNKINDAF* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g1837 260 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 135 256 - -
Amo10g1837 260 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 80 143 IPR004827 GO:0003700|GO:0006355
Amo10g1837 260 Pfam bZIP transcription factor 82 128 IPR004827 GO:0003700|GO:0006355
Amo10g1837 260 PANTHER BZIP TRANSCRIPTION FACTOR 18 135 256 - -
Amo10g1837 260 MobiDBLite consensus disorder prediction 1 33 - -
Amo10g1837 260 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 35 136 - -
Amo10g1837 260 PANTHER BZIP TRANSCRIPTION FACTOR 18 35 136 - -
Amo10g1837 260 CDD bZIP_plant_RF2 83 132 IPR044759 GO:0003700|GO:0006355
Amo10g1837 260 SMART brlzneu 78 142 IPR004827 GO:0003700|GO:0006355
Amo10g1837 260 Gene3D - 81 134 - -
Amo10g1837 260 MobiDBLite consensus disorder prediction 1 54 - -
Amo10g1837 260 SUPERFAMILY Leucine zipper domain 82 138 IPR046347 GO:0003700|GO:0006355
Amo10g1837 260 Coils Coil 105 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g1837 Amo-Chr10 65785461 65788839 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g1837 40 154 bZIP Transcription Factor Family AT2G40620 64.029 4.06e-49 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Amo10g1837 bZIP_1 1.4e-07 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g1837 - - adu:107470204 428.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo10g1837 10 65785461 65788839 Amo20g2338 20 109526094 109529417 hybridization