Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g1833 CCCAGCCCTGGTCGTGGTGCTGCTTGCCTCTCTCTGTGTTGCGGTTCTGCTCAGCCTCATCTTCTCGAACCCAGCCATGGTCGTGGTGCTGCTCGCCTCTCTCTGTGTGAGTACGAGAAGGTTGAGAAGATTAGGGAAGGAACCTACGGCGTCGTTTGCAAGGCTCGCGACCACGTTACCAATGAGACCATCGCTCTCAAGAAGATTTGCCTTGAGCAGGAGGATGAAGGCGTTCCTAGCACTGCATTTCGCGAGATTTCTCTCCTCAAGGAAATGCAGCACAGGAATACTGTCCATCCTTATGTTGCCACTGGAAATAAGAACTCTAAATTTGGCATTAGAAATGAGAWGCTGCAGTGGTTTTTAGATGCTATAAAGGAGCATTCTAATGAGGTTAAGCTTGTAGGTGTCCACTGCCATCTTGGGTCAACAATTACCAAGGTAGACATCTTTAGGGATGCTGRTGTTATTATGATCAACTACATTGACCAAATCCGAGATCAAGGTTTTGAAATTTGTAGCTGGACCAAGTCACAGCTTCYAGGACGGTGTGGTTGCTACAAGCATTCATTCTATGGTAAAATGCAAGACACGGGCAGTGATAAAAATAATGGAGCTCATAATGGATGA 630 0.4651 PSPGRGAACLSLCCGSAQPHLLEPSHGRGAARLSLCEYEKVEKIREGTYGVVCKARDHVTNETIALKKICLEQEDEGVPSTAFREISLLKEMQHRNTVHPYVATGNKNSKFGIRNEXLQWFLDAIKEHSNEVKLVGVHCHLGSTITKVDIFRDAXVIMINYIDQIRDQGFEICSWTKSQLXGRCGCYKHSFYGKMQDTGSDKNNGAHNG* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g1833 209 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 86 172 IPR022644 GO:0003824
Amo10g1833 209 Gene3D Aldolase class I 161 197 IPR013785 -
Amo10g1833 209 Gene3D Phosphorylase Kinase; domain 1 30 123 - -
Amo10g1833 209 Pfam Protein kinase domain 38 108 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo10g1833 209 SUPERFAMILY PLP-binding barrel 96 172 IPR029066 -
Amo10g1833 209 PANTHER DIAMINOPIMELATE DECARBOXYLASE 1, CHLOROPLASTIC-RELATED 91 171 - -
Amo10g1833 209 PANTHER DIAMINOPIMELATE DECARBOXYLASE 91 171 - -
Amo10g1833 209 SUPERFAMILY Protein kinase-like (PK-like) 36 103 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g1833 Amo-Chr10 65473086 65477019 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g1833 35 98 Core Cell Cycle Gene Families AT3G48750 84.375 1.62e-28 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Amo10g1833 Orn_Arg_deC_N 1.3e-12 CL0036
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g1833 K01586 - adu:107472072 162.155