Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g1827 ATGTTTAACAAGCTTGGATTTGTGGTTGGACAAGTTATTGACAAGCTTATCGCTGCCGCTGCTAGCTACCTCTTATTCTGCTTTGTTGCTGCTGTGGTTCAGGCTGGGGCCAGGGGTATTGAGAGCATGGATTGGGCTACAATAGTTATGCAGATGTATAAATCATGGGCCCAACAACGTGGATATAATATAACTGCAACAGATGAAATGCTTGGTGACATTGTAGGAATCAAGGTTCTCCTTCTTACCATCCTTCCTGAAAGGAGAATTAAGAGAAGTGGCAGCAGAAAGCAGCAGAGGTTGTGTCTTTTGAGCATTTTCCTGCAGAGAGTTCTCTTGAAGCAACTATTGAGGGTAGCACCACATCAACTCCAGTGGTTAAGGATAGAAATCATGCCACTGCGACTGCCGCAGCTGCTGATTCAATCCTACTATAGAAGATACCTTGCTCAACGTGCACTGCGTGCTTTGAAGGGATTGGTGAGGCTACAAGCACTTGTAAGGGGACATAATGTGAGCAAGCAAGCGCAGATGACAATGCAGTGCATGCAAGCATTGCTTCGAGTTCAGGCAAGAGTAAGGGCTCAGAATCCAGTTAAATAA 603 0.4527 MFNKLGFVVGQVIDKLIAAAASYLLFCFVAAVVQAGARGIESMDWATIVMQMYKSWAQQRGYNITATDEMLGDIVGIKVLLLTILPERRIKRSGSRKQQRLCLLSIFLQRVLLKQLLRVAPHQLQWLRIEIMPLRLPQLLIQSYYRRYLAQRALRALKGLVRLQALVRGHNVSKQAQMTMQCMQALLRVQARVRAQNPVK* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g1827 200 SUPERFAMILY Release factor 33 87 IPR045853 -
Amo10g1827 200 Gene3D - 29 188 - -
Amo10g1827 200 ProSiteProfiles IQ motif profile. 158 185 IPR000048 GO:0005515
Amo10g1827 200 PANTHER IQ-DOMAIN 17 140 196 - -
Amo10g1827 200 Pfam PCRF domain 33 84 IPR005139 GO:0006415
Amo10g1827 200 PANTHER IQ-DOMAIN 5-RELATED 140 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g1827 Amo-Chr10 65078409 65081168 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g1827 139 195 IQD Protein Family AT3G49260 82.456 1.37e-23 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g1827 - - pop:7464544 93.2041