Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g1821 ATGAGTGAACCTGAAATGACCATTCCACACTTATTCAGATGCCCTATCAGTTTGGACTTGTTTGAAGATCCAGTGACTCTATGCACGGGTCAAACCTATGACAGATCAAGCATAGAGAAATGGTTAGGTACAGGTAACCTGATATGCCCTGTCACAATGCAGAAGCTCCATGACCCTTCCATTGTTCCCAATCACACCCTCCGCCACTTGATCCACCAGTGGCTTCAACTTGGTCCTCAATTTCACCCTGGTAACTCTGCAACTATTGATTCTCTAGCTGCTTTGAAACACACCCTTCAATCTCAAGAGGATGATACCTTAGAGAACAAGCTCCAAGTACTTGAGAAAATCAATGTCTTCTTTTCTGGTAATGAGATTACTCAAATTAGAGGACAAAACAAGAAACTTCTGACTTCAATAGCAATGGGAATAGCAGTAAAACTACTGGAGCTAGAGAGTGGTAGAGAGACATTGGTGAGTCACCCAAACGGGGTTGATACTTTGGTGAAGTTGGTGTTCAGTGTAAAATGTGATCAAGATTGCAGTGATAGTGCTGTTGAGGCACTTTCCATTGTTTGTGGTGATTATATAAGTGCAAGAGAACAAGCCATTGGTGCTGGGGTTATGACAAAGTTGCTGTTGCTTATGCAGAGTCATTGTGCCACCACTACTAAATCAAAGACCAGAATGCTCCTCAAATTGCTCAAATCCAAGTGGGTTCAGGTGCCAAAGTAG 735 0.4272 MSEPEMTIPHLFRCPISLDLFEDPVTLCTGQTYDRSSIEKWLGTGNLICPVTMQKLHDPSIVPNHTLRHLIHQWLQLGPQFHPGNSATIDSLAALKHTLQSQEDDTLENKLQVLEKINVFFSGNEITQIRGQNKKLLTSIAMGIAVKLLELESGRETLVSHPNGVDTLVKLVFSVKCDQDCSDSAVEALSIVCGDYISAREQAIGAGVMTKLLLLMQSHCATTTKSKTRMLLKLLKSKWVQVPK* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g1821 244 PANTHER WDSAM1 PROTEIN 6 124 IPR045185 GO:0061630
Amo10g1821 244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 78 IPR013083 -
Amo10g1821 244 SUPERFAMILY RING/U-box 3 76 - -
Amo10g1821 244 SMART Ubox_2 11 74 IPR003613 GO:0004842|GO:0016567
Amo10g1821 244 PANTHER OS02G0542800 PROTEIN 131 238 - -
Amo10g1821 244 ProSiteProfiles U-box domain profile. 7 81 IPR003613 GO:0004842|GO:0016567
Amo10g1821 244 Pfam U-box domain 8 76 IPR003613 GO:0004842|GO:0016567
Amo10g1821 244 SUPERFAMILY ARM repeat 106 235 IPR016024 -
Amo10g1821 244 CDD RING-Ubox_PUB 12 54 IPR045210 -
Amo10g1821 244 PANTHER OS02G0542800 PROTEIN 6 124 - -
Amo10g1821 244 PANTHER WDSAM1 PROTEIN 131 238 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g1821 Amo-Chr10 64729660 64730916 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g1821 8 74 U-box Gene Family AT1G49780 62.687 5.95e-26 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g1821 - - adu:107479288 261.536