Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g1782 ATGGCTGGTGAAGAAGGTCCTGTTGTGGCAGCTGAGCCAGCAGCTCCTGCCATCGGCGAGCCAATGGATATCATGACTGCCTTACAGCTAACACTTAGGAAGTCACTTGCTTATGGTGGTCTTGCACGAGGCCTTCATGAGGGTGCCAAGGTGATCGAGAAGCGCACTGCTCAGCTCGTTGTTCTTGCTGAGGATTGTGACCAACCTGACTATGTTAAACTCGTCAAGGCCCTTTGTGCTGAGCACAATGTTAGTTTGCTGACAGTTCCAAGTGCAAAGACCCTTGGAGAATGGGCTGGGTTGTGCAAGATTGATTCGGAAGGAAAAGCTAGGAAGGTAACTGGTTGCTCCTGCGTAGTTGTGAAGGATTTTGGAGAAGAACATGAAGCCTATAATGTTGTCCTTCAGCACGTTAAAGCTCAATGA 426 0.4906 MAGEEGPVVAAEPAAPAIGEPMDIMTALQLTLRKSLAYGGLARGLHEGAKVIEKRTAQLVVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKAQ* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g1782 141 ProSitePatterns Ribosomal protein S12e signature. 27 45 IPR000530 GO:0003735|GO:0005840|GO:0006412
Amo10g1782 141 SUPERFAMILY L30e-like 21 139 IPR029064 -
Amo10g1782 141 Gene3D - 9 141 IPR029064 -
Amo10g1782 141 PANTHER 40S RIBOSOMAL PROTEIN S12 1 141 - -
Amo10g1782 141 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 27 120 IPR004038 -
Amo10g1782 141 PANTHER 40S RIBOSOMAL PROTEIN S12 1 141 IPR000530 GO:0003735|GO:0005840|GO:0006412
Amo10g1782 141 PRINTS Ribosomal protein S12E family signature 31 44 IPR000530 GO:0003735|GO:0005840|GO:0006412
Amo10g1782 141 PRINTS Ribosomal protein S12E family signature 45 61 IPR000530 GO:0003735|GO:0005840|GO:0006412
Amo10g1782 141 PRINTS Ribosomal protein S12E family signature 86 107 IPR000530 GO:0003735|GO:0005840|GO:0006412
Amo10g1782 141 PRINTS Ribosomal protein S12E family signature 111 124 IPR000530 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g1782 Amo-Chr10 63463706 63465962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g1782 18 141 Cytoplasmic Ribosomal Protein Gene Family AT1G15930 77.419 9.94e-68 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g1782 K02951 - gmx:100305687 243.047