Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g1760 ATGGATTTTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGTAAATAATAACGATATAGATACCAGTGATGTGACTTGGCGTAGTAGCATCAACATCCCCTTAAGATTCCGCACTCCTCTTTCTCTTGTTCTCGAATATTCTGGCATCATGTGCTCAAACCCCGATGTTTCTTCTCCTGCACCTGCACCTGCACCTGCACCTGGAGATGGACCTTCAACAACTCATTTGCGCCCTAGGTCTCAGCTTCAATCTGGTTCTGGTTCTGGTTCTGGTGGTGCCTGCAGTGGGACTGGTGAAGTTCAAATTCGCATAATTGGTACTGGGGACCAAGACAACAATGATGTGATTGGTTCGGTTTCCTCTTCTTCGCAGCTGAGTCGTGTGTCTCGATCGGGCCATCATGAGTGTATTATGGTCAACGGACGGCCGTGGCCGCCGCCGAACATTACCGACCCTGAGACTCGGCACCGGCTGATTCAGGACCCGCCTGTGTACGAGACACCTGCGTCTGAGGTGTATGAGCTTCTTGGTAGTGGTAATAGGAATGTTCAGCAGGCTGTTAAGTGGCTGGAACAGCTTATCCCTTTCTCCCTCTTGCTGTTGGTGGTGTTCATTCGCCAGCATTTGCAAGGTTTCTTTCTCACAATTTATGTATCAGCTGTGCTGCTTAAATCAAATGAGGTGGTTAAGGAACAGACAGCTCTAAAGGGAGATCGGAAAGTCTCTGTTCTTGTTGGTATCTCAGTTGCCTTCATGCTCCACGTGATAGCCGTTTACTGGTTTCAAAATGATGATCTTTTATACCCAATTGCAATGCTTCCTCCAAAAGAAACACCGCTTTTCTGGCATGCAATATTCACCGTTTTGATCAATGATACATTGGTGCGGCAAGCAGCAATGGCTTTCAAGCTTTTGGTGCTAATTTTCTACAAATGTCGCAGAGGCCCCAGCTTCCGTCGGCAGGGTCAAATCTTAACTGCGGTTGAGTACGTGTTGCTGTTGTATCGTGCCTTGCTGCCAACACCAGTTTGGTATCGGTTTTTCTTGAACCATGATTATGGAAGTCTCTTTTCATCACTGACCACAGGGTTGTATCTAACATTCAAACTAACGACTTTAGTTGAGAAGATCCAAAACTTCTTTTCTGCCTTAAGACTATTATCGGGAAGGAAAGTCCAATATGGGGTTTATGCTACAAAGGAACAGGTAAAGTCTGCTGGTGACATGTGTGCTATATGCCAGGAGAAGATGCGAGCTCCGCTCTTGTTGCACTGTAAACACTTGTTCTGTGAGGAATGTGTGTCCGAATGGCTTGAGCGAGAAAGGACTTGCCCATTATGCAGAGCAAATGTAAAATCTGCTGATCTGCTCACCTATGGAGATGGTTCGACAAGTATTTTGTGTCAGTTGTTTTAA 1464 0.4542 MDFPSSSSSSSSSSSSSSSSSSSSSSSSSVNNNDIDTSDVTWRSSINIPLRFRTPLSLVLEYSGIMCSNPDVSSPAPAPAPAPGDGPSTTHLRPRSQLQSGSGSGSGGACSGTGEVQIRIIGTGDQDNNDVIGSVSSSSQLSRVSRSGHHECIMVNGRPWPPPNITDPETRHRLIQDPPVYETPASEVYELLGSGNRNVQQAVKWLEQLIPFSLLLLVVFIRQHLQGFFLTIYVSAVLLKSNEVVKEQTALKGDRKVSVLVGISVAFMLHVIAVYWFQNDDLLYPIAMLPPKETPLFWHAIFTVLINDTLVRQAAMAFKLLVLIFYKCRRGPSFRRQGQILTAVEYVLLLYRALLPTPVWYRFFLNHDYGSLFSSLTTGLYLTFKLTTLVEKIQNFFSALRLLSGRKVQYGVYATKEQVKSAGDMCAICQEKMRAPLLLHCKHLFCEECVSEWLERERTCPLCRANVKSADLLTYGDGSTSILCQLF* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g1760 487 Pfam Zinc finger, C3HC4 type (RING finger) 424 469 - -
Amo10g1760 487 SUPERFAMILY RING/U-box 419 469 - -
Amo10g1760 487 SMART ring_2 426 463 IPR001841 -
Amo10g1760 487 MobiDBLite consensus disorder prediction 90 111 - -
Amo10g1760 487 ProSitePatterns Zinc finger RING-type signature. 441 450 IPR017907 -
Amo10g1760 487 MobiDBLite consensus disorder prediction 1 37 - -
Amo10g1760 487 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 12 487 IPR044235 GO:0061630|GO:1904294
Amo10g1760 487 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 12 487 - -
Amo10g1760 487 MobiDBLite consensus disorder prediction 72 113 - -
Amo10g1760 487 CDD RING-HC_RNFT1_like 425 464 - -
Amo10g1760 487 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 407 473 IPR013083 -
Amo10g1760 487 ProSiteProfiles Zinc finger RING-type profile. 426 464 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g1760 Amo-Chr10 62541566 62545932 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g1760 53 487 C3H Transcription Factor Family AT5G01960 52.860 6.34e-162 463
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g1760 - K22379 gmx:100784614 485.723