Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g1718 ATGACCTCTGCTAATGACATCACTGATAATGAAGCTGATGGGAAGCAACAGTCTGAATCAGAGATGCAGTCTTCCTCTGCAAATGGAACTTCTGATCCAGACACGGGTTCCCAGAATATTCAGTTTGAAAAACCTGCACAGCTTGGAGATGTTCTGGCTATGGCACCACCTGGTTACCCATATCCAGATCCTTACTATAGAAGCATCTTTGCTCCCTATGATACACAAGCTTATGCCCAACTGCCTTATGGTGGACAACCGATGGTCCATTTTCAGTTAATGGGAATTCAGCAAGCTGGTGTTCCTCTGCCAAGTGATGCTTTTGAGGAGCCTGTGTTTGTAAATGCGAAACAATATCATGGTATATTAAGACGAAGGCAATCCCGTGCCAAAGCTGAATCAGAGCYTAAAGCTATTAGGAATAGGAAGCCATACTTGCATGAATCTCGGCATTTGCATGCGCTGAAAAGAGCAAGAGGATGTGGAGGCCGATTRCTAAATGCAAAGGAAAATGAGAACGGACATAATGATGCGGCATCAACTGACAAATCACAGTGCAATATCAACCCCAATTCTGATAAAAGTGATATCACTTCATCAGATAGGACAGTCTAA 615 0.4325 MTSANDITDNEADGKQQSESEMQSSSANGTSDPDTGSQNIQFEKPAQLGDVLAMAPPGYPYPDPYYRSIFAPYDTQAYAQLPYGGQPMVHFQLMGIQQAGVPLPSDAFEEPVFVNAKQYHGILRRRQSRAKAESEXKAIRNRKPYLHESRHLHALKRARGCGGRLLNAKENENGHNDAASTDKSQCNINPNSDKSDITSSDRTV* 205
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Amo10g1718 204 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 110 164 IPR001289 GO:0003700|GO:0006355
Amo10g1718 204 ProSitePatterns NF-YA/HAP2 subunit signature. 113 133 IPR018362 GO:0003677|GO:0016602
Amo10g1718 204 MobiDBLite consensus disorder prediction 166 204 - -
Amo10g1718 204 SMART cbf3 107 168 IPR001289 GO:0003700|GO:0006355
Amo10g1718 204 MobiDBLite consensus disorder prediction 178 198 - -
Amo10g1718 204 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 2 190 - -
Amo10g1718 204 Gene3D - 108 170 - -
Amo10g1718 204 PRINTS CCAAT-binding transcription factor subunit B signature 142 165 IPR001289 GO:0003700|GO:0006355
Amo10g1718 204 PRINTS CCAAT-binding transcription factor subunit B signature 111 133 IPR001289 GO:0003700|GO:0006355
Amo10g1718 204 ProSiteProfiles NF-YA/HAP2 family profile. 108 168 IPR001289 GO:0003700|GO:0006355
Amo10g1718 204 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 2 190 IPR001289 GO:0003700|GO:0006355
Amo10g1718 204 MobiDBLite consensus disorder prediction 1 44 - -
Amo10g1718 204 MobiDBLite consensus disorder prediction 1 55 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Amo10g1718 Amo-Chr10 60726496 60730789 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g1718 49 203 CCAAT-HAP2 Transcription Factor Family AT1G30500 61.935 1.13e-61 188
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Amo10g1718 CBFB_NFYA 1.3e-24 No_clan
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g1718 K08064 - gmx:100499754 297.745